Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B03
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 32   0.47 
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     30   1.4  
SB_12936| Best HMM Match : LRR_1 (HMM E-Value=0.00017)                 29   3.3  
SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)                 29   3.3  
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)                 29   4.4  

>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 452 NNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEI 589
           NN ++  +P  AL+  K +  LD+    I  V + AFAN S +Q++
Sbjct: 247 NNNSLTTVPLHALRKVKFLKELDLSANLISYVSSTAFANNSKLQKL 292


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 110  SLQHHCTIQISNETHSSNSLCPPRKHVY 27
            +L+HH +I I N+     S+CP   H+Y
Sbjct: 1318 ALEHHLSISILNKVAPRQSMCPGFSHLY 1345


>SB_12936| Best HMM Match : LRR_1 (HMM E-Value=0.00017)
          Length = 472

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 434 KLTFTKNNITMK--YIPTEALKYTKSVLNLDIKYGNIEKVGAYAFAN 568
           KL+   NNI  K       ALK   ++ NLD++  NI   GA A AN
Sbjct: 295 KLSLYSNNIGDKGAIAIASALKTNSTLENLDLRCNNIGDEGAIAMAN 341


>SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)
          Length = 899

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 434 KLTFTKNNITMK--YIPTEALKYTKSVLNLDIKYGNIEKVGAYAFAN 568
           KL+   NNI  K       ALK   ++ NLD++  NI   GA A AN
Sbjct: 831 KLSLYSNNIGDKGAIAIASALKTNSTLENLDLRCNNIGDEGAIAMAN 877


>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
          Length = 575

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +2

Query: 473 IPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEINFK 598
           +P+  L+   +++NL ++  +I  +  +AF  L  +Q +N +
Sbjct: 119 VPSNGLQMFTNLINLTLENNSISAIAPHAFKGLDNLQSLNLR 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,318,346
Number of Sequences: 59808
Number of extensions: 351313
Number of successful extensions: 815
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)