Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B03
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    34   0.077
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    34   0.077
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    32   0.31 
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    32   0.31 
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    31   0.54 
AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    29   3.8  
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    27   8.8  

>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +2

Query: 407 AFDYLKDVTK-LTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQ 583
           AF  L++V + L+ ++NN+  K +PT AL   + +  L +K   IE +   AF N++++ 
Sbjct: 102 AFTGLENVMQELSLSENNL--KEVPTSALAGLRVLNILSLKCNKIENITTKAFVNMTSLI 159

Query: 584 EIN 592
           ++N
Sbjct: 160 DVN 162



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 452 NNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEINFKGQS 607
           +N  M   P++A++   +++ L IKY  I  +    F NL+++  ++  G +
Sbjct: 189 DNNCMTEFPSKAVRNMNNLIALHIKYNKINAIRQNDFVNLTSLSMLSLNGNN 240


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +2

Query: 407 AFDYLKDVTK-LTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQ 583
           AF  L++V + L+ ++NN+  K +PT AL   + +  L +K   IE +   AF N++++ 
Sbjct: 102 AFTGLENVMQELSLSENNL--KEVPTSALAGLRVLNILSLKCNKIENITTKAFVNMTSLI 159

Query: 584 EIN 592
           ++N
Sbjct: 160 DVN 162



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 452 NNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEINFKGQS 607
           +N  M   P++A++   +++ L IKY  I  +    F NL+++  ++  G +
Sbjct: 189 DNNCMTEFPSKAVRNMNNLIALHIKYNKINAIRQNDFVNLTSLSMLSLNGNN 240


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +2

Query: 419 LKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANL 571
           +KD+T +  ++N +  + +PT  L+Y K  + L++ Y NIE +     ANL
Sbjct: 102 MKDLTIIDLSRNQL--REVPTN-LEYAKGSIVLNLSYNNIETIPNSVCANL 149


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +2

Query: 419 LKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANL 571
           +KD+T +  ++N +  + +PT  L+Y K  + L++ Y NIE +     ANL
Sbjct: 102 MKDLTIIDLSRNQL--REVPTN-LEYAKGSIVLNLSYNNIETIPNSVCANL 149


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +2

Query: 365 LFAEHVKPEDDTWTAFDYLKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEK 544
           L+  H         A D +  + +L    NN+ M  +PT+ L+    +  LD+ + +I++
Sbjct: 213 LYLNHCNLSSIYSLALDRIPQLRQLGIGGNNLKM--VPTKELRSLPQLSVLDLSHNSIQE 270

Query: 545 VGAYAFAN 568
           + A AF N
Sbjct: 271 ITACAFCN 278


>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein7 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
 Frame = +2

Query: 338 KIFKSADCFLFAEHVKPEDDTWTAFDYLK-DVTKLTFTKNNITMKYIPTEALKYTKSVLN 514
           KI K    F+    +      W++F +L+  + K+T         Y+P   L   K V  
Sbjct: 168 KITKPNSGFMVMSVIAIASTAWSSFQFLQTSIEKVTKYCTYNRPSYVPYLLLNNEKLVDK 227

Query: 515 LDIKYGNIEKVGA--YAFANLSAVQEINFKGQSN*NIRS*PPSQITK 649
            +     I  V +  Y F  L+ V E+    +   N+RS  P+  TK
Sbjct: 228 FNYADSCISLVVSTLYVFVALALVVELQRTKKRRKNLRSEKPNNTTK 274


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical
           protein C14C10.5 protein.
          Length = 1908

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 154 NDSSNFLF-KNNSLESHYNIIALFKFRTRHILRIRYVRQGNTSTRLRGLT 8
           N   +F+   NN L + + ++ L K  +  ILR++  R   T  R R LT
Sbjct: 374 NQVESFMHPSNNGLHTQHIMVLLSKLLSNTILRLKRERSEKTQHRTRTLT 423


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +2

Query: 425 DVTKLTFTKNNITMKYIPTE---ALKYTKSV--LNLDIKYGNIEKVGAYAFANLSAVQEI 589
           D T  +FT + +  KYI T       YT ++  +N  I Y ++ + G YAF  +  + ++
Sbjct: 53  DGTLNSFTDSWVNSKYISTMQYWVYDYTNTIGIMNRAI-YPDVREKGPYAFDEILTMDKL 111

Query: 590 NF 595
           NF
Sbjct: 112 NF 113


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +2

Query: 323 DNQNPKIFKSADCFLFAEHVKPE-DDTW-----TAFDYLK 424
           DN+N K F+ + C  + EH + E DD+      T+F+Y K
Sbjct: 657 DNKNEKYFEDSVCLAYPEHKRHEYDDSLRRLLNTSFEYSK 696


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,264
Number of Sequences: 27780
Number of extensions: 269723
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)