Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B03
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 628 LTSNILI*LPLKVNFLNSA*ISKSVCSNFLYITIF--NV*VEYRFCVFQR 485
           L +N++I LP+ ++F N    ++ +  N L  TIF  ++ V +R  + Q+
Sbjct: 99  LVANLII-LPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQ 147


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 628 LTSNILI*LPLKVNFLNSA*ISKSVCSNFLYITIF--NV*VEYRFCVFQR 485
           L +N++I LP+ ++F N    ++ +  N L  TIF  ++ V +R  + Q+
Sbjct: 99  LVANLII-LPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQ 147


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 628 LTSNILI*LPLKVNFLNSA*ISKSVCSNFLYITIF--NV*VEYRFCVFQR 485
           L +N++I LP+ ++F N    ++ +  N L  TIF  ++ V +R  + Q+
Sbjct: 99  LVANLII-LPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQ 147


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 77  NETHSSNSLCPPRK 36
           NE H  N + PP+K
Sbjct: 421 NEDHDENMIIPPKK 434


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = -2

Query: 494  ISTPQSVYISW 462
            +S+PQ+++ISW
Sbjct: 1224 VSSPQALFISW 1234


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = -2

Query: 494  ISTPQSVYISW 462
            +S+PQ+++ISW
Sbjct: 1220 VSSPQALFISW 1230


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 98  HCTIQISNETHSSNSL 51
           +CTI I++ +H SN +
Sbjct: 172 NCTIHIASWSHGSNEI 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,968
Number of Sequences: 438
Number of extensions: 3448
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)