Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B03
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07150.1 68418.m00815 leucine-rich repeat family protein cont...    30   1.2  
At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to...    29   2.7  
At2g40925.1 68415.m05051 F-box family protein contains F-box dom...    29   3.6  
At4g39420.1 68417.m05579 expressed protein  ; expression support...    28   6.2  
At3g61070.1 68416.m06835 peroxisomal biogenesis factor 11 family...    28   6.2  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    28   6.2  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    27   8.2  
At2g01920.1 68415.m00126 epsin N-terminal homology (ENTH) domain...    27   8.2  

>At5g07150.1 68418.m00815 leucine-rich repeat family protein
           contains weak similarity to LRR receptor-like protein
           kinase [Nicotiana tabacum] gi|7672732|gb|AAF66615;
           contains Pfam PF00560 domain Leucine Rich Repeat
          Length = 553

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 191 IAVMCVATAFVQSKSXHHQKRATRPNICDLVYNNTLDVRCYCTKDN--QNPKIFKSADCF 364
           IAV+ VA+  +Q  S  H+ +     +  + + N L+V  YC +D       +F+ A   
Sbjct: 320 IAVLAVASGSLQDWSEDHETQFQEKRLSQVNHKNFLNVIGYCHEDEPFNRMLVFEYAPNG 379

Query: 365 LFAEHVKPED 394
              EH+  +D
Sbjct: 380 SLFEHLHDQD 389


>At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to
           cytochrome P450 CYP86A1, Arabidopsis thaliana,
           EMBL:X90458
          Length = 469

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 365 LFAEHVKPED----DTWTAFDYLKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYG 532
           +F  HVKP+       W  F + K + +   T + +  KYI  +  +  +S    DI YG
Sbjct: 176 IFFRHVKPKFLWKLQNWMGFGHEKKMIEANATFDRVCAKYISDKRGEIIRSQRFSDISYG 235

Query: 533 NIE 541
             E
Sbjct: 236 EPE 238


>At2g40925.1 68415.m05051 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 220 KSSCNAHDCDHPPEVHVG*HIKNDSSNFL 134
           K  CN HDC+ PP++ +   I+  + +F+
Sbjct: 17  KDMCNRHDCEIPPDLMIEILIRLPTKSFM 45


>At4g39420.1 68417.m05579 expressed protein  ; expression supported
           by MPSS
          Length = 781

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 245 QKRATRPNICDLVYNNTLDVRCYCTKDNQNPKIFKSADCFLFAEHVKPEDDTWTAFDYLK 424
           +K     NIC   Y  T   R Y  KD+++ KIF     +    H+   DD++  +D  K
Sbjct: 609 EKLGLDDNICFSPYGFTHFSRKYTNKDDRSCKIFH----YSLQTHMTARDDSYLNYDVNK 664

Query: 425 D 427
           +
Sbjct: 665 N 665


>At3g61070.1 68416.m06835 peroxisomal biogenesis factor 11 family
           protein / PEX11 family protein contains Pfam PF05648:
           Peroxisomal biogenesis factor 11 (PEX11)
          Length = 231

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 366 RKQSALLNIFGF*LSLVQ*HRTSSVLLYTRSQMLGRVALF*WCXDLDWTKAV 211
           + ++ALL+ F F   +V   R+       R+++LGR++LF W      T AV
Sbjct: 89  KSKNALLSTFLFLDQIVWLGRSGIYKNKERTELLGRISLFCWLGSSVCTSAV 140


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           protein
          Length = 1143

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/82 (28%), Positives = 40/82 (48%)
 Frame = +2

Query: 407 AFDYLKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQE 586
           +F  LK +  L  + N +T  +IP E     +S+ NL + Y N   V   + ++ S +Q 
Sbjct: 247 SFGELKLLQSLDLSHNRLT-GWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQS 305

Query: 587 INFKGQSN*NIRS*PPSQITKT 652
           ++    SN NI    P+ I ++
Sbjct: 306 LDL---SNNNISGPFPNTILRS 324


>At2g36380.1 68415.m04464 ABC transporter family protein related to
            multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 600  PLKLIS*TALRLAKAYAPTFSILPYLMSKLSTDFVYFNASVGIYFMVI 457
            P   I  T     KA A  +S +PY +S+++ + +Y     G+Y +++
Sbjct: 1252 PAVAIERTVFYREKA-AGMYSAIPYAISQVAVEIMYNTIQTGVYTLIL 1298


>At2g01920.1 68415.m00126 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to clathrin
           assembly protein AP180 (GI:6492344) [Xenopus laevis]
          Length = 312

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 303 TSSVLLYTRSQMLGRVALF*WCXDLDWTKAVATHMTA 193
           TS++L  T SQM+    L     +LDW  A  T +TA
Sbjct: 254 TSNILRITESQMIVLDKLLHIAPELDWKAAKVTPVTA 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,076
Number of Sequences: 28952
Number of extensions: 239893
Number of successful extensions: 534
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)