Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_B01
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 159 3e-40
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 35 0.009
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 29 0.80
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 1.8
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.6
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 7.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.5
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 7.5
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 7.5
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 9.9
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 159 bits (387), Expect = 3e-40
Identities = 75/118 (63%), Positives = 91/118 (77%)
Frame = +2
Query: 314 KLLPHIXGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKXS 493
+LLP + GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P K S
Sbjct: 75 RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTS 134
Query: 494 FFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMXNISPFSYGLVVKXVYD 667
FFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNM NISPF+YG+ V +YD
Sbjct: 135 FFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYD 192
Score = 66.5 bits (155), Expect = 3e-12
Identities = 29/66 (43%), Positives = 46/66 (69%)
Frame = +1
Query: 112 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 291
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 292 DNNPAL 309
++ P L
Sbjct: 68 NDMPEL 73
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 35.1 bits (77), Expect = 0.009
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Frame = +2
Query: 314 KLLPHIXGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLG 478
KL + G VG +FT EV E+ VQ AR GA+AP + VIPA G
Sbjct: 91 KLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQI 149
Query: 479 PEKXSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMXNI-- 625
P + + L +PT + G + ++ D + G ++ + + LL + I
Sbjct: 150 PVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITA 209
Query: 626 SPFSYGLV 649
+ F GL+
Sbjct: 210 AEFKVGLL 217
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.7 bits (61), Expect = 0.80
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 549 MISIVPFEILVGIERAWKKEXFSGPRPVLWAGMTTDNGAMAP 424
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 308 RAGLLSRWSLMALRIIVFFPMSTILEPR 225
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 5.6
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -3
Query: 483 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 313
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 312 XE 307
E
Sbjct: 195 SE 196
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 160 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 306
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 202 MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALXETVATHQXQRWLRVH 357
MQQ + LR + KN ++RK + D AL ETV + + VH
Sbjct: 1507 MQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVH 1558
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 10 FVPHGSRAFCLVLKFHRSPYA 72
F+PHG+R + +LK+ R Y+
Sbjct: 313 FLPHGARIYNTLLKYMRYQYS 333
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 556 IVDDFNSTL*NLGRDRKSL 500
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 9 ICPARKSCVLSCP*ISSKSLRH 74
I PA++ LSCP + SK + H
Sbjct: 490 IVPAKERAYLSCPKVWSKIINH 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,547
Number of Sequences: 5004
Number of extensions: 56768
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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