Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B01
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        140   1e-33
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        31   0.85 
SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   3.4  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.0  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  140 bits (338), Expect = 1e-33
 Identities = 63/93 (67%), Positives = 78/93 (83%)
 Frame = +2

Query: 314 KLLPHIXGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKXS 493
           KLLPHI GN+GFVFT+ DL +VR  ++ENKV APA+ G IAP+ V +PA NTGLGPEK S
Sbjct: 59  KLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTS 118

Query: 494 FFQALSIPTKISKGTIEIINDVHILKPGDKVGA 592
           FFQAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 119 FFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 42/57 (73%), Positives = 47/57 (82%)
 Frame = +1

Query: 139 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPAL 309
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP L
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDL 57


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 556 IVDDFNSTL*NLGRDRKSLEERXLLWTEAGVVGGNDD*QWG 434
           I+D  NS   +  R  K+LEER LL+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 171 DETFWVLVQELDDLNEV-VRLPSSLVLPTHPG*CGVGTSMKFKDKT-KRTTSVRDKF 7
           D+ FW++V+EL+  NE+   + +   L       G G S + ++K  KR  ++R++F
Sbjct: 144 DDEFWLIVRELERYNELKAAIRARHGLAPRDEKSGKGPSPEAREKAKKRARTIREEF 200


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 395  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKXSFFQALSIPTKISKGTIEIINDVHIL 568
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 569  KPGDK 583
             PG K
Sbjct: 2129 TPGKK 2133


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 462 WAGMTTDNGAMAPGRAGAWTLFSNSL 385
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 153  VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 257
            VPKMFH     RG+ T+A  P + T +L+ R  G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,401,797
Number of Sequences: 59808
Number of extensions: 472961
Number of successful extensions: 1128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)