Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_B01
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 148 4e-36
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 147 5e-36
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 147 5e-36
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 31 0.52
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 29 3.7
At5g20600.1 68418.m02446 expressed protein 29 3.7
At3g56700.1 68416.m06307 male sterility protein, putative simila... 29 3.7
At5g13260.1 68418.m01523 expressed protein 28 4.9
At3g24760.1 68416.m03108 F-box family protein ; similar to SKP... 28 4.9
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 6.5
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 148 bits (358), Expect = 4e-36
Identities = 71/122 (58%), Positives = 89/122 (72%)
Frame = +2
Query: 302 QPSXKLLPHIXGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGP 481
Q LLP + GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P
Sbjct: 76 QAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDP 135
Query: 482 EKXSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMXNISPFSYGLVVKXV 661
+ SFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL I PFSYGLVV+ V
Sbjct: 136 SQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESV 195
Query: 662 YD 667
YD
Sbjct: 196 YD 197
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +1
Query: 100 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 279
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 280 KDHLD 294
+ H D
Sbjct: 67 RIHAD 71
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 147 bits (357), Expect = 5e-36
Identities = 70/117 (59%), Positives = 88/117 (75%)
Frame = +2
Query: 317 LLPHIXGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKXSF 496
LLP + GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P + SF
Sbjct: 80 LLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSF 139
Query: 497 FQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMXNISPFSYGLVVKXVYD 667
FQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL I PFSYGLVV+ VYD
Sbjct: 140 FQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYD 196
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +1
Query: 85 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 264
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 265 MRKAIKDHLDNN 300
M+++++ H +N+
Sbjct: 61 MKRSVRIHSENS 72
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 147 bits (357), Expect = 5e-36
Identities = 70/117 (59%), Positives = 88/117 (75%)
Frame = +2
Query: 317 LLPHIXGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKXSF 496
LLP + GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P + SF
Sbjct: 80 LLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSF 139
Query: 497 FQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMXNISPFSYGLVVKXVYD 667
FQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL I PFSYGLVV+ VYD
Sbjct: 140 FQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYD 196
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/71 (52%), Positives = 50/71 (70%)
Frame = +1
Query: 85 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 264
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 265 MRKAIKDHLDN 297
M+++++ H +N
Sbjct: 61 MKRSVRIHSEN 71
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 31.5 bits (68), Expect = 0.52
Identities = 12/55 (21%), Positives = 29/55 (52%)
Frame = +2
Query: 482 EKXSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMXNISPFSYGL 646
E + L +P +++KGT+E++ D + + G ++ A +L + + ++ L
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 28.7 bits (61), Expect = 3.7
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +3
Query: 234 QYRAHGKKHNDAQSHQRPPGQQSSPRRNCCHTSXATLASCSPAETSLRSVTNCWRTKSKL 413
Q+ H H Q HQ+ Q S +RN S + L S +PA S T + L
Sbjct: 158 QHNHHHHHHQQQQQHQQMYFQPQSSQRNT--PSSSPLPSPTPANAKSSSSFTFHTTTANL 215
Query: 414 QLVLVP----LPHCQSSFPPTTP 470
L P P SS PP P
Sbjct: 216 LHPLSPHTPNTPSQLSSTPPPPP 238
>At5g20600.1 68418.m02446 expressed protein
Length = 532
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 285 PPGQQSSPRRNCCHTSXATLASC--SPAETSLRSVTNCW 395
PP +Q+ P C + LASC S + SLR+V W
Sbjct: 8 PPAEQALPIEEDCKSLIKKLASCKQSIRDRSLRTVLRTW 46
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +3
Query: 219 LATWLQYRAHGKKHNDAQSHQRPPGQQSSPRRNCCHTSXATLASCSPAETSLRSVTNCWR 398
LAT ++ +G + S R P PRR HT+ SC ETS +VT+
Sbjct: 7 LATSHAFKLNGVSY--FSSFPRKPNHYM-PRRRLSHTTRRVQTSCFYGETSFEAVTSLVT 63
Query: 399 TKSK 410
K++
Sbjct: 64 PKTE 67
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 244 ARYWSHVARYGSAASVASPRYRH 176
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At3g24760.1 68416.m03108 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 383
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 275 PSKTTWTTIQPSXKLLPHIXGNVGFVFTRGDLVEVRDKLLEN-KVQAPARPGAIAPLSVV 451
P TW + PS H+ G+ F+FT L N + +P R I PL V
Sbjct: 84 PLSNTWLRLPPSSSSSDHLVGSNRFLFTTAPRFSFSPILKPNWRFTSPVRFPRINPLLTV 143
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 447 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 334
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,401,932
Number of Sequences: 28952
Number of extensions: 323313
Number of successful extensions: 862
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -