Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A24
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.4  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   3.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.1  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   5.5  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   7.2  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   7.2  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   9.5  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 179 TWQLLKHKFK*KKIMFTLLNWKKTATV 99
           TW  +KHKFK K I    LNW K   V
Sbjct: 338 TW--MKHKFKLKTISPETLNWLKECDV 362


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +2

Query: 293  LTRMSSFHERQKNLFNLLKDAEEQYSFSKSNKVT--------TTQDYGTIDRKSYRKLKH 448
            L R    +E+ K+L  L ++A  +Y  + SN +           +DYG++++K+Y +  +
Sbjct: 921  LARKKECNEKIKSLGVLPEEAFIKYVSTSSNAIVKKLHKINEALKDYGSVNKKAYEQFNN 980

Query: 449  EMKQ 460
              KQ
Sbjct: 981  FTKQ 984


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 384 LDFEKLYCSSASLSRLNKFFCLS*NDDILVNFWS*YSLLLSIY 256
           +DFE LY  S + S++ K   L  N+D +++     S + S++
Sbjct: 776 MDFEGLYRKSGATSQMKKIVALLRNEDTVLDPSEDISAVTSVF 818


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 296  TRMSSFHERQKNLFNLLKDAEEQYSFSKSNKVTTTQD 406
            +R+   HER  +L N +  A+E+Y F  + K +  +D
Sbjct: 895  SRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEED 931


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 290 KLTRMSSFHERQKNLFNLLKDAEEQYSFSK 379
           ++ R  ++H R++  F+L+K AEE+    K
Sbjct: 129 RIFRSQNWHARRQKQFHLMKPAEERKQLPK 158


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 287 QKLTRMSSFHERQKNLFNLLKDAEEQYSFSKSNKVTTTQDY 409
           + +T   S H  +KNL   L++AE          V T +DY
Sbjct: 631 ETITNAISVHSIKKNLTKQLREAELAQGKIAGKNVVTLKDY 671


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 317 ERQKNLFNLLKDAEEQYSFSKSNKVTTTQDYGTIDR 424
           ER+K+   ++   E   SF+K  ++ + Q+YGT+ R
Sbjct: 488 ERKKHYEGVMNSIE---SFAKRTQIRSLQNYGTLTR 520


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 158 YVSIIAKYVRLYYTCLNVLLWV 223
           +V+II K  R Y  CL VLL +
Sbjct: 396 FVNIITKVSRAYSKCLKVLLGI 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,616
Number of Sequences: 5004
Number of extensions: 47527
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)