Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A24
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)                       31   0.62 
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_34474| Best HMM Match : Mrr_cat (HMM E-Value=2.3)                   29   4.4  
SB_2418| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_38411| Best HMM Match : PHR (HMM E-Value=1.8e-28)                   28   5.8  
SB_37996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)
          Length = 260

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 530 VPDHVKNPEKWKYYSL 577
           VPDHV +PEKW  YSL
Sbjct: 59  VPDHVLHPEKWTKYSL 74


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 452 MKQFRGKQSIFKRPEANIRECLETKAVPDHVKNPEKWKYYSLSGCYN 592
           M +  G +    + EA ++   E K +P+   +PEK K Y   G YN
Sbjct: 280 MTEGEGNRKKDAKKEAAVKMLAELKKLPEPPVDPEKKKKYQRHGLYN 326


>SB_34474| Best HMM Match : Mrr_cat (HMM E-Value=2.3)
          Length = 620

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 193 VQPNILGNY*NINLSKKKLCSHC*IGKKQQ 104
           V+P +LG+     LS+ +LC HC   +K Q
Sbjct: 32  VRPEVLGHLLQGTLSETRLCRHCGANRKGQ 61


>SB_2418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 431 YRKLKHEMKQFRGKQSIFKRPEANIRECLETKAVPDHVKNPEK 559
           YRK     K FR  Q+   R  +N+R+C E K   ++ K   +
Sbjct: 15  YRKTSKRRKCFRTFQTNSYRKTSNLRKCAERKLTTEYRKTSNR 57


>SB_38411| Best HMM Match : PHR (HMM E-Value=1.8e-28)
          Length = 436

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 240 Q*KIIGTHKSTFKQV*YSLTYLAIIET*I*VKKNYVHTVKLEKNSNCFLSGT 85
           Q +I+   K+T+    + L    + +  I ++KN V+T+ +     C LSGT
Sbjct: 347 QDRILAQTKATYSSFTHDLVCDILFDESIAIEKNIVYTITVLLKGPCSLSGT 398


>SB_37996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 431 YRKLKHEMKQFRGKQSIFKRPEANIRECLETKAVPDHVKNPEK 559
           YRK     K FR  Q+   +  +N+R+C E K   ++ K   +
Sbjct: 15  YRKTSKRRKCFRTFQTNSDKKTSNLRKCAERKLTTEYRKTSNR 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,262,063
Number of Sequences: 59808
Number of extensions: 314412
Number of successful extensions: 681
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)