Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A24
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    31   0.007
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.9  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 29/127 (22%), Positives = 57/127 (44%)
 Frame = +2

Query: 269 NREY*DQKLTRMSSFHERQKNLFNLLKDAEEQYSFSKSNKVTTTQDYGTIDRKSYRKLKH 448
           NREY  +K  R    H  ++ L    + + ++YS S+  +  + ++  +   + YR+   
Sbjct: 242 NREY-KEKDRRYEKLHNEKEKLLEE-RTSRKRYSCSREREQKSYKNENSY--RKYRETSK 297

Query: 449 EMKQFRGKQSIFKRPEANIRECLETKAVPDHVKNPEKWKYYSLSGCYN*AXVRRNQHSNC 628
           E  + R ++   + P+  I   L  K +  H  N  K+ Y + +  YN      N ++NC
Sbjct: 298 ERSRDRTERERSREPK--IISSLSNKTI--HNNNNYKYNYNNNN--YNNNNYNNNYNNNC 351

Query: 629 IGIYKRV 649
             +Y  +
Sbjct: 352 KKLYYNI 358


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +2

Query: 518 ETKAVPDHVKNPEKWKYYSLSGCYN 592
           ET      ++    W YY+   CYN
Sbjct: 199 ETLKAAKRMRPAANWGYYAYPYCYN 223


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 3   QCICDLECIRMYISTXT 53
           +C CD++CI   +   T
Sbjct: 477 RCNCDIDCINRVVQRGT 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,805
Number of Sequences: 438
Number of extensions: 3544
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)