Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A23
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       336   1e-92
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   3.3  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      29   3.3  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   3.3  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   7.6  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  336 bits (825), Expect = 1e-92
 Identities = 164/183 (89%), Positives = 173/183 (94%)
 Frame = +2

Query: 47  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 226
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 227 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 406
           RIRELTSVVQKRF  PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65  RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124

Query: 407 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTAXRHVLLRQGVLGI 586
           FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P   YV+TA RHV LRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184

Query: 587 KVK 595
           KVK
Sbjct: 185 KVK 187


>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +2

Query: 101 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 262
           E+L R++  D YS  E    +TP         +IMA R QSVL ++GR   +LT   Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230

Query: 263 FNIPEQSVELYA 298
           F+    SVE +A
Sbjct: 231 FDDLADSVEQFA 242


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +2

Query: 131  GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 310
            GY+  +     + S +++ A   +++  ++ + +RE    +QKRF   E+   +Y     
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000

Query: 311  TRGLCAIAQA 340
             RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 451 WQAAWSTCQINEVCRWTHDPLW 516
           W+ AW+ C + E   +T++P W
Sbjct: 76  WKQAWTPCSLQETTIYTNNPPW 97


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 445 CIWQAAWSTCQINEVCRWTHDPLWRP 522
           C W + W   +  E   WTH P  RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 310 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWRPW 432
           Y+W L + P  +  ++ Y R    +  L C+P  +  W  W
Sbjct: 4   YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +3

Query: 12  LGSRLQSWP*TIFQRSENLLE 74
           LGSR+QS+P +I+Q +EN +E
Sbjct: 406 LGSRMQSYPTSIWQDTENGIE 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,727,049
Number of Sequences: 59808
Number of extensions: 460878
Number of successful extensions: 1335
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)