BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P05_F_A23 (653 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 306 7e-84 Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 30 1.2 Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 30 1.2 AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.2 Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 2.9 Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 2.9 >U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein, small subunitprotein 3 protein. Length = 247 Score = 306 bits (752), Expect = 7e-84 Identities = 149/189 (78%), Positives = 167/189 (88%), Gaps = 1/189 (0%) Frame = +2 Query: 32 MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 208 MA N N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60 Query: 209 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 388 LGE+GRRI+ELTSVVQKRF E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120 Query: 389 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTAXRHVLLR 568 CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LR Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180 Query: 569 QGVLGIKVK 595 QGV+GIKVK Sbjct: 181 QGVIGIKVK 189 >Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein C05C10.2b protein. Length = 1553 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +2 Query: 17 LPLAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 136 L +A +I KK F GDG F E E+ +DGY Sbjct: 883 LRIAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922 >Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein C05C10.2a protein. Length = 1551 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +2 Query: 17 LPLAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 136 L +A +I KK F GDG F E E+ +DGY Sbjct: 883 LRIAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922 >AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical protein Y18D10A.1 protein. Length = 1634 Score = 29.5 bits (63), Expect = 2.2 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +2 Query: 197 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 316 + S+ G+KG+ +REL + + K ++ E++ + AE A R Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435 >Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical protein M88.5b protein. Length = 704 Score = 29.1 bits (62), Expect = 2.9 Identities = 14/54 (25%), Positives = 25/54 (46%) Frame = +2 Query: 119 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 280 L G G + IR+E+ + ++G+ G+ +REL + IPE+ Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596 >Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical protein M88.5a protein. Length = 828 Score = 29.1 bits (62), Expect = 2.9 Identities = 14/54 (25%), Positives = 25/54 (46%) Frame = +2 Query: 119 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 280 L G G + IR+E+ + ++G+ G+ +REL + IPE+ Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,621,668 Number of Sequences: 27780 Number of extensions: 326442 Number of successful extensions: 874 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 874 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1455289764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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