Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A23
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.84 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.84 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -2

Query: 511  VDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSD 362
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1162 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -2

Query: 511  VDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSD 362
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1158 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1207


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 148  SPGHSHPLGDHYYGHQDTKCARRERT 225
            S  H  PL +H Y   D+  +  ERT
Sbjct: 1323 SEDHRRPLSEHIYSSIDSDYSTLERT 1348


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 17  LPLAIMAVNNISKKRKFVGDGVFKAELNEFLTR 115
           +PL I  V  +  K KF+   + K   N+ +T+
Sbjct: 100 MPLLINVVKYLGGKHKFISKKIKKTMENKDITK 132


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 331 DSAKTTSSHLFSIQFYRLLWNVESLLYYGSQ 239
           D +   S+H  +I  Y  LW ++S L   +Q
Sbjct: 122 DCSGIVSAHKIAIDEYERLWVLDSGLVNNTQ 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,714
Number of Sequences: 438
Number of extensions: 3776
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)