Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A20
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.84 
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           24   1.5  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   4.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 459 WKHSNGYMKMPSVPLMLMIIDV 524
           W  SNG +K+PS  ++ MI  V
Sbjct: 813 WYSSNGDIKVPSTKVLAMISSV 834


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 371 LGDLLNG--EQAVRRATELGGVECVSG 445
           LGD + G  + A+RR    GGV+ +SG
Sbjct: 23  LGDNIQGITKPAIRRLARRGGVKRISG 49


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 375 PNAIQHFAARMYPLVNVGSNDT 310
           PN I H+   + PL  +   DT
Sbjct: 31  PNVIDHYFRDLQPLFKLACTDT 52


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 287 PSYTCIASCNMQICCHNMLHFLGT 216
           P Y C   CN  I C N +   GT
Sbjct: 470 PIYECNKRCNCDIDCINRVVQRGT 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,438
Number of Sequences: 438
Number of extensions: 3152
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)