Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A19
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    26   0.37 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              25   0.84 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.9  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +2

Query: 341 DECKEYDKMDKXLLKLNRAKVQTM 412
           D+ +EY K+ + L+++N+  +QT+
Sbjct: 254 DQAEEYKKIQQILIRMNKLCIQTI 277


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 431 GKLSKENIQLKHYIKKYLTELALREKDRPHSVKIASGVQKLDANGKTLNRPVT-CIEGAL 607
           GK++ E+  ++ YI+  + + +  +KD   +  ++  + K+  N   +N+ +T C   A+
Sbjct: 50  GKINIEDENVQLYIECAMKKFSFVDKDGNFNEHVSREIAKIFLNENEINQLITEC--SAI 107

Query: 608 CNAVMHEKRMKTY 646
            +  +H K  K +
Sbjct: 108 SDTNVHLKITKIF 120


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 383 KLNRAKVQTMCLKTEKGKLSKENIQLKHYIKKYLTELALREKDRP 517
           +L R +   + L+   GK  K+N+ L+  + KYL  L   E   P
Sbjct: 75  ELRRTEAFEVDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEP 119


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 540 PEAILTLCGLSFSLSANSVRYFL 472
           PE  LT C   +    N +R F+
Sbjct: 190 PEGFLTSCSFDYLTDTNEIRIFV 212


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 200 VKQKINKVIQLADICRKYENVGDNIVFYD 286
           V QK+ K I  + I  +Y N G+ +  YD
Sbjct: 165 VAQKLQKEIPNSIILDQYTNPGNPLAHYD 193


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 329 YSNVHSQANPHHSRSH 282
           + + H  A PHH  SH
Sbjct: 421 HGHSHIHATPHHHHSH 436


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 272 IVFYDSENDVDSLDYEHLNRAMIDECKEYDKMDKXLLKLNRAKV 403
           I+ +     ++SLD   + R+ + +C++ +K    L   N A V
Sbjct: 783 ILDFHESGFMESLDNHWILRSNVQQCEQLEKAPNTLGLKNMAGV 826


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 326 SNVHSQANPHHSRSHKKQ 273
           S+VHS +  ++SR H  Q
Sbjct: 383 SSVHSDSGENNSRGHSGQ 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,143
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)