Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A16
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26768| Best HMM Match : PCI (HMM E-Value=0.01)                     109   1e-24
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_26768| Best HMM Match : PCI (HMM E-Value=0.01)
          Length = 266

 Score =  109 bits (263), Expect = 1e-24
 Identities = 70/156 (44%), Positives = 96/156 (61%), Gaps = 9/156 (5%)
 Frame = +3

Query: 210 NHPLEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLN 389
           +H LEQ+VLLAK A+G+A   LIKQVLEAP ++VFGEL+EM NI+EL     A   + LN
Sbjct: 10  SHQLEQYVLLAKSARGAALTALIKQVLEAPALYVFGELIEMSNIQELAKTENAPFWQLLN 69

Query: 390 LFAYGTY---KDYIENKSDYLE--LTTVQCKKLQHLTIA--TLATQEKCIPYSVL-LEEL 545
           +FA+GTY   KD +     ++   + T+    L   +I    + T     P  +  L  L
Sbjct: 70  IFAFGTYTDYKDVVALLHIHVRHHVLTLYSWMLWSYSIFLDNMGTLPPLTPVQIKKLRHL 129

Query: 546 DIKNVRDL-EDLIIEAXYADIIHGKLDQECKRVEVD 650
            I ++    +DLIIEA YADIIHGKLDQ+ K++EV+
Sbjct: 130 TIVSLASKSKDLIIEAIYADIIHGKLDQKNKQLEVE 165


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +3

Query: 129  DIDVLKFKMNPMSMDRDEPSSLLSFSSNHPLEQFVLLAKGAKGSACAELIKQVLEAPGVH 308
            D+D++   +   + +  E S+    SS   LE  V   K    S+CA  ++  +    V 
Sbjct: 1244 DLDLVSSALKDATTETKELSATAVVSSTVSLEGIVDALK----SSCATTVRDAVARKLVQ 1299

Query: 309  VFGELLEMPNIKELESGPYATHLKTLN 389
            V   +LE   +KE+ S       +T N
Sbjct: 1300 VMSNILESAGLKEMTSKTIEQERRTSN 1326


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 144 KFKMNPMSMDRDEPSSLLSFSSNHPLEQFVLLAKGAKGSACAEL 275
           KF +N + MDR  P +   F S H       LA  A   ACA +
Sbjct: 228 KFWLNFLDMDRLSPQATSRFISEHRKPGLWALANNAGYGACAPI 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,938,246
Number of Sequences: 59808
Number of extensions: 372873
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)