Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_A16
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02090.3 68414.m00133 COP9 signalosome complex subunit 7ii / ... 109 2e-24
At1g02090.2 68414.m00132 COP9 signalosome complex subunit 7ii / ... 109 2e-24
At1g02090.1 68414.m00131 COP9 signalosome complex subunit 7ii / ... 109 2e-24
At3g02200.2 68416.m00199 proteasome family protein contains Pfam... 42 5e-04
At3g02200.1 68416.m00198 proteasome family protein contains Pfam... 42 5e-04
At4g19006.1 68417.m02801 26S proteasome regulatory subunit, puta... 34 0.072
At5g45620.1 68418.m05608 26S proteasome regulatory subunit, puta... 33 0.13
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ... 31 0.67
At5g65240.1 68418.m08207 leucine-rich repeat family protein / pr... 30 1.5
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 4.7
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 28 4.7
At5g64970.1 68418.m08172 mitochondrial substrate carrier family ... 28 6.2
At5g62970.1 68418.m07901 F-box family protein contains F-box dom... 27 8.2
>At1g02090.3 68414.m00133 COP9 signalosome complex subunit 7ii / CSN
complex subunit 7ii (CSN7) (COP15) / FUSCA protein
(FUS5) FUSCA5, CSN7, COP15; identical to CSN complex
subunit 7ii [Arabidopsis thaliana] GI:18056671, FUS5
protein of the COP9 complex GI:3288823; identical to
cDNA CSN complex subunit CSN7, alternatively spliced
Length = 237
Score = 109 bits (262), Expect = 2e-24
Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Frame = +3
Query: 219 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 398
++Q V A K A LI + P + F E+L +PN+ +LE + +L L LFA
Sbjct: 11 IDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA 70
Query: 399 YGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 578
+GT+ DY N + L+ Q KL+ LT+ TLA K +PY L+ ELD+ NVR+LED
Sbjct: 71 HGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDF 130
Query: 579 II-EAXYADIIHGKLDQECKRVEV 647
+I E YA I+ GKLDQ + EV
Sbjct: 131 LINECMYAGIVRGKLDQLKRCFEV 154
>At1g02090.2 68414.m00132 COP9 signalosome complex subunit 7ii / CSN
complex subunit 7ii (CSN7) (COP15) / FUSCA protein
(FUS5) FUSCA5, CSN7, COP15; identical to CSN complex
subunit 7ii [Arabidopsis thaliana] GI:18056671, FUS5
protein of the COP9 complex GI:3288823; identical to
cDNA CSN complex subunit CSN7, alternatively spliced
Length = 225
Score = 109 bits (262), Expect = 2e-24
Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Frame = +3
Query: 219 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 398
++Q V A K A LI + P + F E+L +PN+ +LE + +L L LFA
Sbjct: 11 IDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA 70
Query: 399 YGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 578
+GT+ DY N + L+ Q KL+ LT+ TLA K +PY L+ ELD+ NVR+LED
Sbjct: 71 HGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDF 130
Query: 579 II-EAXYADIIHGKLDQECKRVEV 647
+I E YA I+ GKLDQ + EV
Sbjct: 131 LINECMYAGIVRGKLDQLKRCFEV 154
>At1g02090.1 68414.m00131 COP9 signalosome complex subunit 7ii / CSN
complex subunit 7ii (CSN7) (COP15) / FUSCA protein
(FUS5) FUSCA5, CSN7, COP15; identical to CSN complex
subunit 7ii [Arabidopsis thaliana] GI:18056671, FUS5
protein of the COP9 complex GI:3288823; identical to
cDNA CSN complex subunit CSN7, alternatively spliced
Length = 260
Score = 109 bits (262), Expect = 2e-24
Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Frame = +3
Query: 219 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 398
++Q V A K A LI + P + F E+L +PN+ +LE + +L L LFA
Sbjct: 11 IDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA 70
Query: 399 YGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 578
+GT+ DY N + L+ Q KL+ LT+ TLA K +PY L+ ELD+ NVR+LED
Sbjct: 71 HGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDF 130
Query: 579 II-EAXYADIIHGKLDQECKRVEV 647
+I E YA I+ GKLDQ + EV
Sbjct: 131 LINECMYAGIVRGKLDQLKRCFEV 154
>At3g02200.2 68416.m00199 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 417
Score = 41.5 bits (93), Expect = 5e-04
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Frame = +3
Query: 318 ELLEMPNIKELES-GPYATHLKTLNLFA---YGTYKDYIENKSDYLE---LTTVQC-KKL 473
+LL++P + +LE YA + L +F Y ++ S +L+ L+ C K+
Sbjct: 240 DLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSYGLSNEDCVTKM 299
Query: 474 QHLTIATLATQEKC-IPYSVLLEELDIKNVRDLEDLIIEAXYADIIHGKLDQ 626
+ L++ LA+ E IPY+ + + L + N +D+E I++A A +I K+DQ
Sbjct: 300 RLLSLVDLASDESGKIPYTSIKDTLQV-NEQDVELWIVKAITAKLIECKMDQ 350
>At3g02200.1 68416.m00198 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 364
Score = 41.5 bits (93), Expect = 5e-04
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Frame = +3
Query: 318 ELLEMPNIKELES-GPYATHLKTLNLFA---YGTYKDYIENKSDYLE---LTTVQC-KKL 473
+LL++P + +LE YA + L +F Y ++ S +L+ L+ C K+
Sbjct: 240 DLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSYGLSNEDCVTKM 299
Query: 474 QHLTIATLATQEKC-IPYSVLLEELDIKNVRDLEDLIIEAXYADIIHGKLDQ 626
+ L++ LA+ E IPY+ + + L + N +D+E I++A A +I K+DQ
Sbjct: 300 RLLSLVDLASDESGKIPYTSIKDTLQV-NEQDVELWIVKAITAKLIECKMDQ 350
>At4g19006.1 68417.m02801 26S proteasome regulatory subunit,
putative (RPN9) similar to 26S proteasome subunit p40.5
[Homo sapiens] gi|3618343|dbj|BAA33214
Length = 386
Score = 34.3 bits (75), Expect = 0.072
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Frame = +3
Query: 237 LAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKD 416
L++ K +L L ++ FGELL P +K L L F +G
Sbjct: 193 LSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHILQAFNHGDLVQ 252
Query: 417 Y-----IENKSDYLELTTVQCKK--LQHLTIATLA-------TQEKCIPYSVLLEELDIK 554
Y + N S + V+ +K L+ + I L +++ IP SV+ E +
Sbjct: 253 YQELCRVHNASLSAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPLSVIAERTKL- 311
Query: 555 NVRDLEDLIIEAXYADIIHGKLDQ 626
++ D+E L++++ +I G LDQ
Sbjct: 312 SIEDVEHLLMKSLSVHLIEGILDQ 335
>At5g45620.1 68418.m05608 26S proteasome regulatory subunit,
putative (RPN9) contains similarity to 26S proteasome
subunit p40.5 GI:3618343 from [Homo sapiens]
Length = 386
Score = 33.5 bits (73), Expect = 0.13
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Frame = +3
Query: 237 LAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKD 416
L++ K +L L ++ FGELL P +K L L F +G
Sbjct: 193 LSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHILQAFNHGDLVQ 252
Query: 417 Y-----IENKSDYLELTTVQCKK--LQHLTIATLA-------TQEKCIPYSVLLEELDIK 554
Y + N S + V+ +K L+ + I L +++ IP S++ E +
Sbjct: 253 YQELCRVHNASLIAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPLSIIAERTKL- 311
Query: 555 NVRDLEDLIIEAXYADIIHGKLDQ 626
++ D+E L++++ +I G +DQ
Sbjct: 312 SIEDVEHLLMKSLSVHLIEGIIDQ 335
>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 525
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 452 HSPVQEITASDH--CNTCNTREMYPLQCVT*GIGY*KC 559
H P+ I + CN CN RE+ L C+ G GY C
Sbjct: 401 HHPLYYIPQVEEKQCNGCNNREVRVLTCIESGCGYVLC 438
>At5g65240.1 68418.m08207 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 617
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 480 LTIATLATQEKCIPYSVLLEELDIKNVRDLEDLIIEAXYADIIHGKLDQECKRVEVDV 653
+ + L T ++ I +S L EE D+ + ++ L E DI+ KLD++ + EV++
Sbjct: 485 IMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLEDIVDKKLDEDYIKEEVEM 542
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +3
Query: 360 PYATHLKTLNLFAYGTYKDYIENKSDYLELTT---VQCKKLQHLTIATLATQEKCIPYSV 530
P L+ NLF+ K Y ++ +YL + + KK + +E+ IP V
Sbjct: 394 PSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEV 453
Query: 531 LLEELDIKN 557
L ELD KN
Sbjct: 454 L--ELDNKN 460
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +3
Query: 360 PYATHLKTLNLFAYGTYKDYIENKSDYLELTT---VQCKKLQHLTIATLATQEKCIPYSV 530
P L+ NLF+ K Y ++ +YL + + KK + +E+ IP V
Sbjct: 395 PSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEV 454
Query: 531 LLEELDIKN 557
L ELD KN
Sbjct: 455 L--ELDNKN 461
>At5g64970.1 68418.m08172 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 428
Score = 27.9 bits (59), Expect = 6.2
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +3
Query: 186 SSLLSFSSNHPLEQFVL--LAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESG 359
++++S + PLE+ L + +G +G+ ELI+++ G+ F + + NI L +
Sbjct: 141 AAMVSRTCIAPLERMKLEYIVRGEQGNLL-ELIQRIATNEGIRGFWKG-NLVNI--LRTA 196
Query: 360 PYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQ 461
P+ K++N +AY TY+ + S E T +
Sbjct: 197 PF----KSINFYAYDTYRGQLLKLSGNEETTNFE 226
>At5g62970.1 68418.m07901 F-box family protein contains F-box domain
Pfam:PF00646
Length = 449
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 375 LKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIK 554
L TL F + Y ++ K +L T +K + L IAT++ P L E+D+K
Sbjct: 380 LSTLQTFEWSGYPGSVQGK----DLATYILRKSRQLKIATISIGYGLDPQQKLKMEMDVK 435
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,253,808
Number of Sequences: 28952
Number of extensions: 253912
Number of successful extensions: 612
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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