Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A10
         (402 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    25   0.37 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    25   0.37 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   0.37 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   0.85 

>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 0.37
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH 351
           H   K F+C  CHK+      L  H M++H
Sbjct: 4   HTGEKPFECQECHKRFTRDHHLKTH-MRLH 32


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 0.37
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVHK 354
           H   + FKC IC +   T   L  H M VH+
Sbjct: 157 HTGERPFKCKICGRAFTTKGNLKTH-MGVHR 186



 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 256 IQHQKAKHFKCHICHKKLYTGPGLSIH 336
           I+H+ +   +C ICH+ L     L +H
Sbjct: 127 IEHKLSDPNQCVICHRVLSCKSALQMH 153


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.6 bits (51), Expect = 0.37
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH 351
           H   K F+C  CHK+      L  H M++H
Sbjct: 157 HTGEKPFECQECHKRFTRDHHLKTH-MRLH 185


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 0.85
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 244 EKILIQHQKAKHFKCHICHKKLYTGPGLSIH 336
           ++ L  H   K F C IC+K+      L+ H
Sbjct: 363 QRHLRTHTGEKRFACPICNKRFMRSDHLAKH 393


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,671
Number of Sequences: 336
Number of extensions: 1588
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)