Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A10
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   1.1  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   1.4  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   2.5  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    25   4.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   5.8  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   5.8  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    25   5.8  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 226 TXXFDDEKILIQHQKAKHFKCHIC 297
           T  +DD++ L +H + KH +C+IC
Sbjct: 252 THFYDDDE-LFKHCREKHERCYIC 274



 Score = 25.0 bits (52), Expect = 4.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 277 HFKCHICHKKLYTGPGLSIHCMQVHK 354
           H KC  C+   Y    L  HC + H+
Sbjct: 244 HPKCEFCNTHFYDDDELFKHCREKHE 269


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 277 HFKCHICHKKLYTGPGLSI 333
           +F C++C   +YTG GL++
Sbjct: 380 YFACYLCSVGVYTGAGLNV 398


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH 351
           H+  K F C  C++       L+ H  Q+H
Sbjct: 50  HENVKAFSCSFCNRAFARSDVLNRHVQQMH 79


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 357 FFMYLHAVYGQSRSCVQLFVTNVTFKMLRFLMLDENLFVVKL 232
           FF +  + YGQS++ +     N T K + F + DE   V+ +
Sbjct: 150 FFPFNQSGYGQSKAAL-----NFTMKEISFELQDEGFIVISI 186


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 318 SCVQLFVTNVTFKMLRFLMLDENL 247
           S + LF++ ++FK L F + D NL
Sbjct: 543 SYIDLFISLMSFKNLNFKLFDYNL 566


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 299 TKSCTQDLDCPYT 337
           TKSC+  +DCP+T
Sbjct: 281 TKSCSAAVDCPHT 293


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 357 FFMYLHAVYGQSRSCVQLFVTNVTFKMLRFLMLDENLFVVKL 232
           FF    + YGQS++ +     N T K + F + DE   V+ +
Sbjct: 150 FFPSSQSAYGQSKAAL-----NYTMKEISFELQDEGFIVISI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,971
Number of Sequences: 5004
Number of extensions: 24040
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)