Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_A10
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 93 6e-20
07_03_1165 - 24459156-24460139 32 0.20
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 29 1.4
08_01_1059 - 10775143-10776063 27 5.6
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 27 5.6
07_01_0867 - 7198874-7199764 27 7.3
04_04_0050 - 22360294-22361804,22362087-22362378,22363367-223634... 27 7.3
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 26 9.7
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 26 9.7
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 93.5 bits (222), Expect = 6e-20
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +1
Query: 235 FDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDXVPNSLPNRSN 399
FDDEKIL+QHQKAKHFKCH+CHKKL T G++IH +QVHKE++ VPN+ P R +
Sbjct: 20 FDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPERES 74
Score = 29.1 bits (62), Expect = 1.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 177 MGRKKKKASKPWCWYCN 227
MG+KKK+ K +C+YC+
Sbjct: 1 MGKKKKRVEKVFCYYCD 17
>07_03_1165 - 24459156-24460139
Length = 327
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 217 GIVTXXFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDXVPNSLP 387
G V DD+ + ++ F CH+C+K+ + + H M+VH + P SLP
Sbjct: 92 GDVIGAGDDDAAPVAARREASFPCHLCNKEFGSRKAVHGH-MRVHHAENEKEPMSLP 147
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 241 DEKILIQHQKAKH----FKCHICHKKLYTGPGLSIHCMQVHKEAI 363
D +++ + H KC IC ++ GL +H +VHK+ +
Sbjct: 446 DGSVMVLREDGTHPSPGLKCKICSQEFSDDQGLGLHWTEVHKKEV 490
>08_01_1059 - 10775143-10776063
Length = 306
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 280 FKCHICHKKLYTGPGLSIHCMQVHK 354
FKC+ C +K YT L H HK
Sbjct: 107 FKCNYCQRKFYTSQALGGH-QNAHK 130
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 235 FDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVH 351
F + L H +HF CHIC + LS Q H
Sbjct: 154 FYGDNELYTHMTREHFSCHICQRYSARLQSLSYLVRQQH 192
>07_01_0867 - 7198874-7199764
Length = 296
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 243 VVKLPCYNTSTKVWM 199
VVKLPC+ +T++W+
Sbjct: 120 VVKLPCFEKATELWL 134
>04_04_0050 -
22360294-22361804,22362087-22362378,22363367-22363420,
22363627-22363718,22364713-22364915,22365892-22366133,
22366205-22366330,22366800-22366907,22367394-22367457,
22367543-22367681,22367867-22368038,22368198-22368482
Length = 1095
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 274 KHFKCHICHKKLYTGPGLSIH 336
K F C IC +L +G G+SIH
Sbjct: 391 KLFICAICQVELESGQGISIH 411
>05_05_0030 -
21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 196 RHPNLGAGIVTXXFDDEKILIQHQKAKHFKCHICH 300
++P +G+V D+ I HQKAK + I H
Sbjct: 280 QNPQESSGLVAEGSADDNIHKYHQKAKRARTQITH 314
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 235 FDDEKILIQHQKAKHFKCHICHKK 306
F + L H +H+ CHIC ++
Sbjct: 173 FYGDNELYTHMSREHYSCHICQRQ 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,868,429
Number of Sequences: 37544
Number of extensions: 143337
Number of successful extensions: 352
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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