Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_A10
(402 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 108 2e-24
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 108 2e-24
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 31 0.23
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 31 0.23
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 30 0.71
U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical pr... 29 0.94
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 29 0.94
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 29 1.2
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 29 1.2
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 29 1.7
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 29 1.7
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 29 1.7
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 27 3.8
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 27 3.8
AL021483-7|CAA16344.3| 218|Caenorhabditis elegans Hypothetical ... 27 3.8
AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila od... 27 6.7
Z22174-4|CAA80129.2| 361|Caenorhabditis elegans Hypothetical pr... 26 8.8
U80027-22|AAC48112.1| 336|Caenorhabditis elegans Seven tm recep... 26 8.8
AF125447-2|AAD12808.1| 250|Caenorhabditis elegans Hypothetical ... 26 8.8
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 108 bits (259), Expect = 2e-24
Identities = 45/56 (80%), Positives = 50/56 (89%)
Frame = +1
Query: 235 FDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDXVPNSLPNRSNI 402
FDDEKILIQHQKAKHFKCHICHKKL++GPGLSIHCMQVHKE ID +P ++ R NI
Sbjct: 20 FDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQVHKETIDKIPAAVHGRDNI 75
Score = 44.8 bits (101), Expect = 2e-05
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 177 MGRKKKKASKPWCWYCN 227
MGRKKKK KPWCWYCN
Sbjct: 1 MGRKKKKVDKPWCWYCN 17
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 108 bits (259), Expect = 2e-24
Identities = 45/56 (80%), Positives = 50/56 (89%)
Frame = +1
Query: 235 FDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDXVPNSLPNRSNI 402
FDDEKILIQHQKAKHFKCHICHKKL++GPGLSIHCMQVHKE ID +P ++ R NI
Sbjct: 20 FDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQVHKETIDKIPAAVHGRDNI 75
Score = 44.8 bits (101), Expect = 2e-05
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 177 MGRKKKKASKPWCWYCN 227
MGRKKKK KPWCWYCN
Sbjct: 1 MGRKKKKVDKPWCWYCN 17
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 31.5 bits (68), Expect = 0.23
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 190 RRRHPNLGAGIVTXXFDDEKILIQHQKAKHFKCHIC 297
R L GI F D++ L +H++ +H CH+C
Sbjct: 6 RNLDDKLLCGICGKYFSDDESLREHRRQRHMTCHMC 41
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 31.5 bits (68), Expect = 0.23
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 190 RRRHPNLGAGIVTXXFDDEKILIQHQKAKHFKCHIC 297
R L GI F D++ L +H++ +H CH+C
Sbjct: 6 RNLDDKLLCGICGKYFSDDESLREHRRQRHMTCHMC 41
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 29.9 bits (64), Expect = 0.71
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 280 FKCHICHKKLYTGPGLSIHCMQVHKEAID 366
+KC C K+ T GLS H M H++ D
Sbjct: 271 YKCTYCSKRYKTSSGLSNHMMSSHQKISD 299
>U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical
protein F56D1.1 protein.
Length = 468
Score = 29.5 bits (63), Expect = 0.94
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAI 363
H K + CH C++K + ++H + H+ +I
Sbjct: 423 HDGIKPYSCHTCNQKFHARDRFAVHLSKYHQTSI 456
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 29.5 bits (63), Expect = 0.94
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 274 KHFKCHICHKKLYTGPGLSIHCM-QVHKEAIDXVPNSLPNRSN 399
K ++C +C T LSIH H A+ +PNS+ +N
Sbjct: 155 KPYRCDLCRYSTTTKGNLSIHMQSDKHLHAVQELPNSIEFAAN 197
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVHKE 357
H ++ F+C ICHK L H +VH++
Sbjct: 262 HSQSNRFECTICHKSYPVPSELRKHIKRVHEK 293
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 241 DEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVH 351
++ +L H F C +C K L IH QVH
Sbjct: 15 EDSLLKPHTAGSIFTCVMCSKAFPNAEALQIHTDQVH 51
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVHKE 357
H ++ F+C ICHK L H +VH++
Sbjct: 380 HSQSNRFECTICHKSYPVPSELRKHIKRVHEK 411
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 241 DEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVH 351
++ +L H F C +C K L IH QVH
Sbjct: 133 EDSLLKPHTAGSIFTCVMCSKAFPNAEALQIHTDQVH 169
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH--KEAIDXVPNSLP 387
H + FKC IC + T L H M VH K + +P SLP
Sbjct: 327 HTGERPFKCKICQRAFTTKGNLKTH-MGVHRSKHSFRGLPISLP 369
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH--KEAIDXVPNSLP 387
H + FKC IC + T L H M VH K + +P SLP
Sbjct: 298 HTGERPFKCKICQRAFTTKGNLKTH-MGVHRSKHSFRGLPISLP 340
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH--KEAIDXVPNSLP 387
H + FKC IC + T L H M VH K + +P SLP
Sbjct: 327 HTGERPFKCKICQRAFTTKGNLKTH-MGVHRSKHSFRGLPISLP 369
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 280 FKCHICHKKLYTGPGLSIH 336
+KCH+C + Y G GL+ H
Sbjct: 21 YKCHLCGQCFYRGCGLASH 39
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 280 FKCHICHKKLYTGPGLSIH 336
+KCH+C + Y G GL+ H
Sbjct: 21 YKCHLCGQCFYRGCGLASH 39
>AL021483-7|CAA16344.3| 218|Caenorhabditis elegans Hypothetical
protein Y38H8A.5 protein.
Length = 218
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 253 LIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVH 351
+ H++ K F CH+C K L H ++H
Sbjct: 183 MFTHEEHKPFTCHVCSKGFCRNFDLKKHLRKMH 215
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 256 IQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKE 357
+ H+ K F C IC + + L+ H M H+E
Sbjct: 156 LTHEDTKKFSCSICSRAFHQSYNLAFH-MFTHEE 188
>AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila
odd-skipped-like protein2 protein.
Length = 254
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 262 HQKAKHFKCHICHKKLYTGPGLSIH 336
HQK + FKC IC K L +H
Sbjct: 174 HQKDRPFKCEICGKGFCQSRTLLVH 198
>Z22174-4|CAA80129.2| 361|Caenorhabditis elegans Hypothetical
protein K01B6.2 protein.
Length = 361
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 239 TTKRFSSNIRKRSILNVTFVTKSCT 313
TT R SN +K SIL TF++ S T
Sbjct: 329 TTNRDESNRKKSSILACTFISNSNT 353
>U80027-22|AAC48112.1| 336|Caenorhabditis elegans Seven tm receptor
protein 64 protein.
Length = 336
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 118 LKFKLRIISVEI*YLKTCFLIRKSHANYKRM 26
L F L +I + + T F I+K H YKRM
Sbjct: 13 LGFILNLIVNGVFFYLTLFKIKKMHGTYKRM 43
>AF125447-2|AAD12808.1| 250|Caenorhabditis elegans Hypothetical
protein Y14H12B.1a protein.
Length = 250
Score = 26.2 bits (55), Expect = 8.8
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 268 KAKHFKCHI--C-HKKLYTGPGLSIHCMQVHKEAIDXVPNS 381
K K FKC C H+ YT GL H HK +P++
Sbjct: 22 KTKQFKCTWDGCDHRVFYTSRGLQWHTSVAHKLDNSEIPST 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,099,722
Number of Sequences: 27780
Number of extensions: 139032
Number of successful extensions: 456
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -