Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A10
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   0.75 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.75 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   2.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.2  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH 351
           H   K F+C  CHK+      L  H M++H
Sbjct: 4   HTGEKPFECPECHKRFTRDHHLKTH-MRLH 32


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +1

Query: 256 IQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEA 360
           + H   K +KC +CH+   +   + +H ++ H ++
Sbjct: 252 VAHYGEKVYKCTLCHETFGSKKTMELH-IKTHSDS 285



 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 262 HQKAKHFKCHICHKKLYTGPGLSIH 336
           H   K ++C  C K       LS+H
Sbjct: 114 HTGEKPYQCEYCSKSFSVKENLSVH 138



 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 262 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH 351
           H K + +KC +C +       L  H M++H
Sbjct: 142 HTKERPYKCDVCERAFEHSGKLHRH-MRIH 170


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 274 KHFKCHICHKKLYTGPGLSIHCMQVHKE 357
           K F C +C K L +   L  H    H E
Sbjct: 4   KLFTCQLCGKVLCSKASLKRHVADKHAE 31



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/30 (23%), Positives = 14/30 (46%)
 Frame = +1

Query: 265 QKAKHFKCHICHKKLYTGPGLSIHCMQVHK 354
           ++ + ++C IC +   +   L  H    HK
Sbjct: 31  ERQEEYRCVICERVYCSRNSLMTHIYTYHK 60


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 280 FKCHICHKKLYTGPGLSIHCMQVH 351
           F+C  C+K L +   L  H   VH
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQNVH 26


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 243 RKDSHPTSESEAF*MSHLSQKA 308
           R+D HP   ++   ++ L+Q+A
Sbjct: 160 RRDIHPELNTQGIALADLTQRA 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,893
Number of Sequences: 438
Number of extensions: 1520
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)