Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A10
         (402 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ...    88   2e-18
At3g16300.1 68416.m02057 integral membrane family protein contai...    30   0.66 
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ...    29   0.88 
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ...    27   3.5  
At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein ...    27   4.7  
At2g32920.1 68415.m04036 thioredoxin family protein similar to S...    27   4.7  
At1g01780.1 68414.m00097 LIM domain-containing protein similar t...    27   6.2  
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ...    26   8.2  

>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 367

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 36/55 (65%), Positives = 43/55 (78%)
 Frame = +1

Query: 235 FDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDXVPNSLPNRSN 399
           FDDEKIL+QHQKAKHFKCH+CHKKL T  G+ IH +QVHKE +  VPN+   R +
Sbjct: 21  FDDEKILVQHQKAKHFKCHVCHKKLSTASGMVIHVLQVHKENVTKVPNAKDGRDS 75



 Score = 30.7 bits (66), Expect = 0.38
 Identities = 11/18 (61%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
 Frame = +3

Query: 177 MGRKKKKAS-KPWCWYCN 227
           MG+KKK+A+ K WC+YC+
Sbjct: 1   MGKKKKRATEKVWCYYCD 18


>At3g16300.1 68416.m02057 integral membrane family protein contains
           TIGRFAM TIGR01569 : plant integral membrane protein
           TIGR01569; contains Pfam PF04535 : Domain of unknown
           function (DUF588);  At2g38480, At1g45222 and others
           share this domain structure; distantly related to
           GP|14030504 salicylic acid-induced fragment 1 protein
           {Gossypium hirsutum}
          Length = 212

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 366 VYGFFMYLHAVYGQSRSCVQLFVTN---VTFKMLRFLMLDENLFVVKLPCYNTSTKVW 202
           +YGF   LHAV+  S S + L V +   V + +++ L++     + K P   T T+ W
Sbjct: 77  LYGFEFQLHAVWSLSDSLIYLVVVSSATVLYSLIQ-LIISGTRLMRKSPVIPTRTQAW 133


>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
           (ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
           type
          Length = 178

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 241 DEKILIQHQKAKHF-KCHICHKKLYTGPGLSIHCMQVHKEAIDXVPN 378
           D K L    K  HF KC IC +   TG  L  H M+ H+ ++   P+
Sbjct: 80  DVKHLSNDYKGNHFHKCSICSQSFGTGQALGGH-MRRHRSSMTVEPS 125


>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 917

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 274 KHFKCHICHKKLYTGPGLSIHCMQVHKEAI 363
           K  KC ICH++  TG  L  H  ++H E +
Sbjct: 796 KIHKCSICHREFSTGQSLGGH-KRLHYEGV 824


>At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 191

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 268 KAKHFKCHICHKKLYTGPGLSIHCMQVHK 354
           K K FKCH C +   T   L  H    HK
Sbjct: 51  KEKRFKCHYCFRNFPTSQALGGH-QNAHK 78


>At2g32920.1 68415.m04036 thioredoxin family protein similar to
           SP|Q15084 Protein disulfide isomerase A6 precursor (EC
           5.3.4.1) {Homo sapiens}; contains Pfam profile PF00085:
           Thioredoxin
          Length = 440

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 363 YGFFMYLHAVYGQSRSCVQLFVTNVTFKML 274
           +GFF    A+YG S   VQL  +N   K+L
Sbjct: 16  FGFFDLSSALYGSSSPVVQLTASNFKSKVL 45


>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 205

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 283 KCHICHKKLYTGPGLSIHCMQVHK 354
           KC++C K +Y    LSI  M  HK
Sbjct: 9   KCNVCDKTVYVVDMLSIEGMPYHK 32


>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
           GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 496

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 363 YGFFMYLHAVYGQSRSCVQLFVTNVTFKMLRFL 265
           Y FF  L A+YG+S+  V  +  N  F M   L
Sbjct: 181 YRFFRQLEAIYGESKDSVSCY-NNTQFIMTNAL 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,433,283
Number of Sequences: 28952
Number of extensions: 123426
Number of successful extensions: 327
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)