Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_A04
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31531| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)                        41   0.001
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)                        41   0.001
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       31   0.62 
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  29   4.3  
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)                  29   4.3  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_31531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score =  103 bits (248), Expect = 1e-22
 Identities = 44/107 (41%), Positives = 78/107 (72%)
 Frame = +3

Query: 288 KDRKLAKKLLEEGKRDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLD 467
           + ++ A++   E   ++A        YQE LL  TD QL+ LE+L  ++EFAQ++I+V++
Sbjct: 120 RTQEKARRGERERTTNKAKLLLKKKRYQEQLLQRTDNQLDNLEKLVQEIEFAQVQIKVVE 179

Query: 468 GLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQREIDELISGQLT 608
           GLKTGN  L ++H++++I+++E+IM+E++E ++ Q+EID+L+SG LT
Sbjct: 180 GLKTGNECLNQLHEMMSIEDVERIMDETKEAVEYQKEIDDLLSGSLT 226


>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
 Frame = +3

Query: 174 KHKKVVSRVTEQ-DKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKRDRAXXX 350
           K KK    V EQ  +A+                +E  +E +   AK  +++ KR  A   
Sbjct: 17  KKKKNKENVPEQTQQAIWKLRETEKLLEKKQEYLEQRIEIETNTAKANVKKNKRI-ALQA 75

Query: 351 XXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEI 530
                  E  L   D  L  +E     LE +    +V+  +     ALK+VH  L+ID++
Sbjct: 76  LKRKKRLEKQLSQIDGTLSTIEFQRDALENSSTNTEVVKSMSFAANALKEVHKTLDIDDV 135

Query: 531 EKIMEESREGIDKQREIDELIS 596
             +M++ +E      EI + I+
Sbjct: 136 HDVMDDVQEQAQLSDEISQAIN 157


>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
 Frame = +3

Query: 174 KHKKVVSRVTEQ-DKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKRDRAXXX 350
           K KK    V EQ  +A+                +E  +E +   AK  +++ KR  A   
Sbjct: 17  KKKKNKENVPEQTQQAIWKLRETEKLLEKKQEYLEQRIEIETNTAKANVKKNKRI-ALQA 75

Query: 351 XXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEI 530
                  E  L   D  L  +E     LE +    +V+  +     ALK+VH  L+ID++
Sbjct: 76  LKRKKRLEKQLSQIDGTLSTIEFQRDALENSSTNTEVVKSMSFAANALKEVHKTLDIDDV 135

Query: 531 EKIMEESREGIDKQREIDELIS 596
             +M++ +E      EI + I+
Sbjct: 136 HDVMDDVQEQAQLSDEISQAIN 157


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
 Frame = +3

Query: 318 EEGKRDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQV-LDG---LKTGN 485
           E+  RDR           E L H     LE+   L   L+    E+   LD    L T  
Sbjct: 281 EQTARDREETVERLARETEKLAHGNYQHLEETVALVSQLQLDTRELMSRLDERRRLLTKT 340

Query: 486 VALKK--VHDILNIDEIEKIMEESREGIDKQREIDELIS 596
           +A  K     I  +DEIE+++ E    +++QRE+   IS
Sbjct: 341 LAFYKSGYKAIQKLDEIEQLLPEEHLTVEEQRELLSAIS 379


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 504 HDILNIDEIEKIMEESREGIDKQREIDELISGQLT 608
           HD++ I  + K +EE+   I+   E+ +++S +LT
Sbjct: 266 HDMMQIISVSKRLEETENSIEGLTELVDVLSAELT 300


>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
          Length = 551

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
 Frame = +3

Query: 324 GKRDRAXXXXXXXXYQENLLHNTDTQLEKLE---QLTHDLEFAQIEIQVL-DGLKT-GNV 488
           GK++R+         +E L  + +   +KLE   +L   +     EI  L +G++  G +
Sbjct: 5   GKQERSELMTTLKNVKEKLEESKNLYAKKLESEKELQDKINELNTEISSLQEGMQELGTI 64

Query: 489 ALKKVHDILNIDEIEKIMEESREGIDKQREIDELISGQL 605
           A K++    ++DE++K +EE  + + + +   E++  +L
Sbjct: 65  AEKEI----SLDEMQKCLEEKEDKLTQLQRRVEVLEAEL 99


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 510  ILNIDEIEKIMEESREGIDKQREIDEL 590
            +L  +EIEK+ E ++E  +K+R+ +EL
Sbjct: 1402 VLRTEEIEKLYERNKELREKERDYEEL 1428


>SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
 Frame = +3

Query: 144 KQIKWVLYSGKHKKVVSR--VTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLL 317
           + ++ V+   + K    R  V E+DK +                    L K+R  AK L 
Sbjct: 55  QNVRSVMQGARRKMANLRLDVEERDKLLESEKKLREQMERELANKTAELYKER--AKALS 112

Query: 318 EEGKRDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEI 455
              +  R         Y  N+LH  D +     QLT  L  A+ EI
Sbjct: 113 RSPEETRYSSFDTSLDYNGNVLHRGDLEASLNHQLTEKLAEAESEI 158


>SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 417 VLISPAAYLYYVEDSPDISSSSIKVLPCH-AYLLLVIS 307
           V++ P  Y Y+V   P   ++ + VLP H  YL++V+S
Sbjct: 72  VIVLPVNYTYFVIVLPVHYTNRVIVLPVHYTYLVIVLS 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,789,125
Number of Sequences: 59808
Number of extensions: 206823
Number of successful extensions: 504
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)