Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_A04
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09260.1 68418.m01069 SNF7-related contains similarity to nuc... 72 4e-13
At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domai... 69 3e-12
At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domai... 44 1e-04
At4g29160.2 68417.m04173 SNF7 family protein contains Pfam domai... 41 8e-04
At4g29160.1 68417.m04172 SNF7 family protein contains Pfam domai... 41 8e-04
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 40 0.002
At2g20010.1 68415.m02339 expressed protein 31 0.66
At1g17460.1 68414.m02141 myb family transcription factor contain... 30 1.5
At4g27560.1 68417.m03959 glycosyltransferase family protein cont... 29 2.7
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do... 27 8.2
>At5g09260.1 68418.m01069 SNF7-related contains similarity to
nuclear protein SNF7 [Saccharomyces cerevisiae]
SWISS-PROT:P39929
Length = 216
Score = 71.7 bits (168), Expect = 4e-13
Identities = 37/138 (26%), Positives = 70/138 (50%)
Frame = +3
Query: 195 RVTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKRDRAXXXXXXXXYQE 374
++TE D+A+ +E +E +++ A+ L+ E ++DRA QE
Sbjct: 10 KITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQE 69
Query: 375 NLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESR 554
LL D L +EQ D+E + V + LK GN A+K + +N+D+++K+M+++
Sbjct: 70 ELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTA 129
Query: 555 EGIDKQREIDELISGQLT 608
E Q E+ ++ +L+
Sbjct: 130 EAKAYQDELSAILGEKLS 147
>At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 219
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/138 (25%), Positives = 71/138 (51%)
Frame = +3
Query: 195 RVTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKRDRAXXXXXXXXYQE 374
++TE D+A+ +E +E +++ A+ L+ E ++DRA QE
Sbjct: 10 QITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQE 69
Query: 375 NLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESR 554
LL D + +EQ D+E + V + LK GN A+K + L++D+++K+M+++
Sbjct: 70 ELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTA 129
Query: 555 EGIDKQREIDELISGQLT 608
+ Q E++ ++ +L+
Sbjct: 130 DAKAYQDELNAILGEKLS 147
>At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 213
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +3
Query: 399 QLEKLEQLTHD----LEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGID 566
QL + HD LE A+ + +D L+TG A+K + NID+++K M+E E +
Sbjct: 76 QLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTE 135
Query: 567 KQREIDELIS 596
++I E +S
Sbjct: 136 NMKQIQEALS 145
>At4g29160.2 68417.m04173 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 192
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +3
Query: 399 QLEKLEQLTHD----LEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGID 566
QL + HD LE A+ + +D L++G A+K + NID+++K M+E E +
Sbjct: 48 QLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTE 107
Query: 567 KQREIDELIS 596
++I E ++
Sbjct: 108 NMKQIQEALA 117
>At4g29160.1 68417.m04172 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 219
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +3
Query: 399 QLEKLEQLTHD----LEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGID 566
QL + HD LE A+ + +D L++G A+K + NID+++K M+E E +
Sbjct: 75 QLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTE 134
Query: 567 KQREIDELIS 596
++I E ++
Sbjct: 135 NMKQIQEALA 144
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +3
Query: 372 ENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDIL-NIDEIEKIMEE 548
+ L + +LEK E+ DLE Q++ L+ T +VA++K D+ N++ + + ++
Sbjct: 243 QGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEA--TLSVAMEKERDLSENLNAVMEKLKS 300
Query: 549 SREGIDKQ-REIDE 587
S E ++KQ REIDE
Sbjct: 301 SEERLEKQAREIDE 314
>At2g20010.1 68415.m02339 expressed protein
Length = 834
Score = 31.1 bits (67), Expect = 0.66
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 384 HNTDTQLEKLEQLTHDLEFAQIEIQVLD-GLKTGNVALKKVHDILNIDEIEKIMEESREG 560
HN ++E T+D E+++I VL + G L HD NID +E + G
Sbjct: 210 HNLILEIENDAMETNDPEYSKILSSVLSLVMDWGEKRLLAYHDTFNIDNVETLETTVSLG 269
Query: 561 IDKQREIDELISGQ 602
I + + E IS +
Sbjct: 270 ILVAKVLGEDISSE 283
>At1g17460.1 68414.m02141 myb family transcription factor contains
Pfam PF00249: Myb-like DNA-binding domain
Length = 604
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 390 TDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIME-ESREGID 566
TD E +E D + +D T + + +K+H I E+EK++E S+ G+
Sbjct: 458 TDVDQEMMEPELLDSSGDSSDDNFVDAPITQSASGRKLHRAWTISEVEKLVEGVSKYGVG 517
Query: 567 KQREIDEL 590
K EI +L
Sbjct: 518 KWTEIKKL 525
>At4g27560.1 68417.m03959 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 455
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +3
Query: 399 QLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGID 566
QLE L H++ F + + +DGL G + ++ + + D + M+ +R+ ++
Sbjct: 47 QLENLNLFPHNIVFRSVTVPHVDGLPVGTETVSEI-PVTSADLLMSAMDLTRDQVE 101
>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
domain-containing protein low similarity to polyamine
oxidase isoform-1 [Homo sapiens] GI:14860862; contains
Pfam profiles PF01593: amine oxidase flavin-containing,
PF04433: SWIRM domain
Length = 1265
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 465 DGLKTGNVALKKVHDILNIDEIEKIMEESREGI 563
DGL+ G L+ HD +NID+ + S+ GI
Sbjct: 739 DGLEYGLQRLRMPHDKVNIDKFGLLNSSSKTGI 771
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,116,172
Number of Sequences: 28952
Number of extensions: 150089
Number of successful extensions: 437
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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