Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P24
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_53609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_38143| Best HMM Match : Neuromodulin (HMM E-Value=6.4)              28   5.7  

>SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 70  NWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINW--AVYKQAVPIPGM 234
           NW         EQ+ +L  F+   + Y R +   PP+   + W    Y Q + IPG+
Sbjct: 174 NWMGFVNCARNEQEQNLEVFQYGGNIYYRAIKDVPPDQELLVWYGGTYMQFLGIPGI 230


>SB_53609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 277 YPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATK 405
           +  D    LVES W +V + ID    E +AN  + Q+EI+ TK
Sbjct: 31  FSTDYVENLVESFWTRVDDKIDKAFHERDAN-KTTQEEIHQTK 72


>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
 Frame = +1

Query: 76   AALAERVPAEQ--KAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVDTFQ 249
            + +AE V ++Q  KA      +   + +R +LA   E   ++ A     VP+ G     +
Sbjct: 738  STVAEPVDSKQDFKAEPDETPLPDPSTMRELLALADE---VSTAAEGSTVPV-GSKQVSE 793

Query: 250  KQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEI 393
               E   +P P+  Q  L  S   +V +A+++    SNAN   Y +E+
Sbjct: 794  AAQEEAPLPDPSTMQDIL--SLVGEVTSAVESDDSSSNANCVEYIEEV 839


>SB_38143| Best HMM Match : Neuromodulin (HMM E-Value=6.4)
          Length = 217

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
 Frame = +1

Query: 76  AALAERVPAEQ--KAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVDTFQ 249
           + +AE V ++Q  KA      +   + +R +LA   E   ++ A     VP+ G     +
Sbjct: 94  STVAEPVDSKQDFKAEPDETPLPDPSTMRELLALADE---VSTAAEGSTVPV-GSKQVSE 149

Query: 250 KQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEI 393
              E   +P P+  Q  L  S   +V +A+++    SNAN   Y +E+
Sbjct: 150 AAQEEAPLPDPSTMQDIL--SLVGEVTSAVESDDSSSNANCVEYIEEV 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,833,631
Number of Sequences: 59808
Number of extensions: 466685
Number of successful extensions: 1432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)