Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_P24
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52300.1 68416.m05748 ATP synthase D chain-related contains w... 43 2e-04
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 29 2.0
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 2.7
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ... 29 2.7
At5g44590.1 68418.m05464 hypothetical protein 29 3.5
At3g50030.1 68416.m05470 hypothetical protein 29 3.5
At2g02660.1 68415.m00205 hypothetical protein 29 3.5
At1g64380.1 68414.m07296 AP2 domain-containing transcription fac... 28 4.7
At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containi... 28 6.2
At1g30500.1 68414.m03728 CCAAT-binding transcription factor (CBF... 28 6.2
At1g22650.1 68414.m02830 beta-fructofuranosidase, putative / inv... 28 6.2
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor... 27 8.2
At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical t... 27 8.2
>At3g52300.1 68416.m05748 ATP synthase D chain-related contains weak
similarity to ATP synthase D chain, mitochondrial (EC
3.6.3.14) (Swiss-Prot:P31399) [Rattus norvegicus]
Length = 168
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +1
Query: 178 EPPKINWAVYKQAVPIPGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQE 357
EP I+W Y++ + G+VD +++ Y++++IP D T + +++ + + Q+
Sbjct: 58 EPEPIDWDYYRKGIGA-GIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQK 116
Query: 358 SNANIASYQKEI-NATKALLPYDQMTMEDFYDAHPDL 465
S +KEI + + MT +++++ HP+L
Sbjct: 117 SLKESERLEKEIADVQEISKKLSTMTADEYFEKHPEL 153
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 263 ASYCFWNVSTIPGIGTACLYTA-QLILGGSGGLA 165
+SYC+++++ I G+ T LY A QL L S +A
Sbjct: 46 SSYCYFDITEIDGVNTNELYNAVQLYLSSSVSIA 79
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 293 RRHL*NRSGIKSRMPSTRLSKSPMPTLHPTKKKSMQPRP 409
R H +RS +S+ P LSKSP +L + KS P P
Sbjct: 226 RSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSP 264
>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
PF03715: Uncharacterised protein family (UPF0120)
Length = 779
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 349 IQESNANIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKK 486
+QE + + Y KE +A LL +D +ED D PD L+ +K
Sbjct: 81 LQEKDPDFFQYMKEHDAE--LLKFDATEIEDDADVEPDTDLEDTEK 124
>At5g44590.1 68418.m05464 hypothetical protein
Length = 349
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 207 VHSPVNLGRFRWIG*YPSEIIIGFYFES 124
VHS +N G W G Y ++I F FES
Sbjct: 92 VHSVINKGGQNWTGAYWVNVVIVFNFES 119
>At3g50030.1 68416.m05470 hypothetical protein
Length = 501
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/95 (23%), Positives = 41/95 (43%)
Frame = +1
Query: 109 KAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVDTFQKQYEALKIPYPAD 288
K LAA + S +L L KI+W + A G + + +K +EA+ + + +
Sbjct: 112 KEDLAAMAVDSKVFLVPALLELLRG-KISWVEQRAAARALGHLASHEKSFEAVSL-FEEE 169
Query: 289 TQTALVESQWNQVKNAIDAFIQESNANIASYQKEI 393
+E N +KN +F+ + YQ ++
Sbjct: 170 IVKLAMEIATNCLKNVYKSFLGVEDRGRLKYQSDL 204
>At2g02660.1 68415.m00205 hypothetical protein
Length = 421
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +1
Query: 133 IKSDNYLRRVLANPPEPPKI----NWAVYKQAVPIPGMVDTFQKQYEALKIPYPAD 288
I D Y+ R L P + N Y++A G D KQY+AL I YP+D
Sbjct: 114 IYGDRYVARPLICNPNTGRYVILPNRYTYRKAYSFFGF-DPIGKQYKALSIAYPSD 168
>At1g64380.1 68414.m07296 AP2 domain-containing transcription
factor, putative contains Pfam profile: PF00847 AP2
domain
Length = 335
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 169 NPPEPPKINWAVYKQAVPIPGMVDTFQKQYEALKIPYP 282
NPP PP++ +VY + I ++ F Q A+ P+P
Sbjct: 58 NPPPPPQLGSSVYLRQRDI---IEKFHLQNRAISTPHP 92
>At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 743
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 133 IKSDNYLRRVLANPPEPPKINW----AVYKQAVPIPGMVDTFQK 252
+KS Y RRV P+P +W Y +A I M TF+K
Sbjct: 54 MKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEK 97
>At1g30500.1 68414.m03728 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
Length = 186
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 142 DNYLRRVLANPPEPPKINWAVYKQAVPIP 228
D Y R + A PP+P V +Q VP+P
Sbjct: 62 DPYYRSIFAPPPQPYTGLMGVQQQGVPLP 90
>At1g22650.1 68414.m02830 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 534
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 301 LVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDF 444
+V W+ ++ ++ F + IA+Y +AT+ +L YDQ+ + DF
Sbjct: 69 MVAEAWDALRRSLVYFRGQPVGTIAAYD---HATEEVLNYDQVFVRDF 113
>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
chloroplast (NDPK2) identical to SP|O64903 Nucleoside
diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain; contains Pfam profile
PF00334: Nucleoside diphosphate kinase
Length = 231
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 338 STRLSK-SPMPTLHPTKKKSMQPRPYCRMTR*PWKTSMMPILTWPLIPSRSQPSGHTLRK 514
+T +SK +P+ P ++ S P+C R ++T++ + SR+ S LR
Sbjct: 4 ATVVSKWTPLCVASPPERNSASLNPHCSPARVNFRTALAAFRPQFRLFSRNSASRRRLRA 63
Query: 515 SSSTMS 532
SSS S
Sbjct: 64 SSSAES 69
>At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical to
small ribosomal protein 4 [Arabidopsis thaliana]
GI:1460051
Length = 362
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -3
Query: 357 LLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNR 220
LL K + +DL PLRF CRL V N I+ + RNR
Sbjct: 3 LLKKLIQRDIDLSPLRFQTCRLLSGNVRNRELTIIQRRILRRLRNR 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,538,100
Number of Sequences: 28952
Number of extensions: 324318
Number of successful extensions: 899
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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