Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_P22
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 173 8e-44
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 173 8e-44
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 171 3e-43
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 171 3e-43
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 54 6e-08
At1g20530.1 68414.m02558 hypothetical protein 29 1.8
At3g06960.2 68416.m00827 expressed protein 28 4.2
At3g06960.1 68416.m00826 expressed protein 28 4.2
At3g18310.1 68416.m02330 expressed protein 27 7.3
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 9.6
At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein ... 27 9.6
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 173 bits (420), Expect = 8e-44
Identities = 76/109 (69%), Positives = 96/109 (88%)
Frame = +2
Query: 146 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 325
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 326 GEGSKTWDRFQMXIHKRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 472
GEG+ TWDRF++ +HKRVIDL S ++VKQITSI IEPGV+VEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 173 bits (420), Expect = 8e-44
Identities = 76/109 (69%), Positives = 96/109 (88%)
Frame = +2
Query: 146 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 325
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 326 GEGSKTWDRFQMXIHKRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 472
GEG+ TWDRF++ +HKRVIDL S ++VKQITSI IEPGV+VEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 171 bits (415), Expect = 3e-43
Identities = 75/103 (72%), Positives = 93/103 (90%)
Frame = +2
Query: 164 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 343
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 344 WDRFQMXIHKRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 472
WDRF++ +HKRVIDL S ++VKQITSI IEPGV+VEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 171 bits (415), Expect = 3e-43
Identities = 75/103 (72%), Positives = 93/103 (90%)
Frame = +2
Query: 164 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 343
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 344 WDRFQMXIHKRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 472
WDRF++ +HKRVIDL S ++VKQITSI IEPGV+VEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 54.0 bits (124), Expect = 6e-08
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Frame = +2
Query: 107 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
A+ V S I +++P +IRI L S V +E C +++ A+ + GPV +P
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132
Query: 287 TKILRITTRKTPCGEGSKTWDRFQMXIHKRVID-LHSPSEIVKQITSINIEPGVQVEVTI 463
TK K+P + F++ H+R+ID L+ ++ + + +++ GV VEV +
Sbjct: 133 TKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 386 GRSLSCGXSSENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVSW 243
G +C S + P SLNL+H FY Y + P ++ +W
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFYSRRYESGTITPPPPPPAPSNYAW 153
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 174 MRWIGETSAWGFSMSLPDT 118
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 174 MRWIGETSAWGFSMSLPDT 118
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g18310.1 68416.m02330 expressed protein
Length = 873
Score = 27.1 bits (57), Expect = 7.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 238 WSQETEAACKGPSPHANQDPA 300
W+ +++ C GPSP +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -2
Query: 214 LERAH--IA*SKSDPDAVDRGDLCL 146
++R H +A +K DPD+V RG +CL
Sbjct: 691 IQRLHEKMAVTKLDPDSVRRGSICL 715
>At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 365
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 119 LQRLPCCLLNSGRDKQLFNQKLFSAEAGETSRFK*LL 9
+Q + CC S + N F AG + RFK LL
Sbjct: 61 MQNVSCCSSRSLESSRFVNTVKFEENAGYSDRFKGLL 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,226,846
Number of Sequences: 28952
Number of extensions: 239687
Number of successful extensions: 516
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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