Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P21
         (551 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    44   1e-06
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    24   1.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.3  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 43.6 bits (98), Expect = 1e-06
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +3

Query: 234 YESNWWSRSPRVRADVLLLCGQLRVRHVFTAGPFADLTLSTFIKILKGAYSYYTLL 401
           YE +W+  S +++ +V +  GQL    VF       L L TF KI++ A+S++T L
Sbjct: 282 YEMHWYDASKQIQNEVFIFMGQLEKPIVFYVANIFSLDLDTFKKIMQKAWSFFTAL 337


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 318 FTAGPFADLTLSTFIKILKGAYSYYTLL 401
           FTA  F ++   TF  IL    SY+ ++
Sbjct: 277 FTAADFFEIDRGTFFGILSTTTSYFIIM 304


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 215 ECVSRPVRKQLVVEKPARQSGRAALVRTTSRQTCLHGGTFRGPD 346
           E V +PV +  V +KP+     A   R  +   C   G  R PD
Sbjct: 391 EPVPQPVEE--VTQKPSSTKAPAPPSRDLTTTLCTKAGYVRDPD 432


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,681
Number of Sequences: 336
Number of extensions: 2126
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)