Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P21
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    28   1.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.1  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    27   2.4  

>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 192 NDVLFKNANVSLGPY--ESNWWSRSPR-VRADVLLLCGQLRVRHVFTAGPFADL 344
           +DVLF+  +    PY  E++  + +P+ + +     CG L + H+F  GP  D+
Sbjct: 304 SDVLFRKVSRQYWPYTSENSVLANTPQSIISLAAQSCGYLGLLHLFDKGPLFDI 357


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 45   MFLYILMCSLMLCASAYQLTSATSTAXKLLMAEYLIFGIAQLFVFCW 185
            ++  +L    +L AS+YQLT  +  + +  ++ Y++  I   F   W
Sbjct: 1938 LYTIVLAIGQILGASSYQLTLLSGESAQSTVSMYILLSIFSFFSLFW 1984


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 25/95 (26%), Positives = 41/95 (43%)
 Frame = +3

Query: 57  ILMCSLMLCASAYQLTSATSTAXKLLMAEYLIFGIAQLFVFCWHSNDVLFKNANVSLGPY 236
           I MC   L +S+    ++ S A  + ++ +    IA  FV        L  +A  ++ P 
Sbjct: 391 ICMCPWNLLSSSNSFANSLS-AYAVFLSSFAGILIADYFVI---RKGYLKVDALYTINPN 446

Query: 237 ESNWWSRSPRVRADVLLLCGQLRVRHVFTAGPFAD 341
           E  W++    +RA    +CG L +  V  AG   D
Sbjct: 447 EPYWFTYGINLRAFASYICG-LLINVVGLAGAVGD 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,844
Number of Sequences: 5004
Number of extensions: 34590
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)