Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P21
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179           28   4.3  
07_03_0479 + 18564733-18565716                                         28   5.7  
03_05_0514 - 25082662-25082669,25082978-25083043,25083903-250840...    28   5.7  
01_05_0170 - 18888849-18889880                                         27   7.5  
12_01_0092 + 726892-727247,727338-727347                               27   10.0 
11_01_0092 + 683869-684224,684315-684324                               27   10.0 
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853     27   10.0 

>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
          Length = 380

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 18  FSIHCSHRLMFLYILMCSLMLCASAYQLTSATSTAXKLLMAEYLIFGIA 164
           FS  C   ++  +I     +LC+  Y   S    A KLL ++Y++F +A
Sbjct: 190 FSPACQESILIWHIATDVFLLCSHQYSSLSKEVQAIKLL-SDYMVFLVA 237


>07_03_0479 + 18564733-18565716
          Length = 327

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 210 NANVSLGPYESNWWSRSPRVRAD 278
           +A  +  P  S+WW+R+PR+ AD
Sbjct: 77  SAPAAPSPAVSDWWARAPRLYAD 99


>03_05_0514 -
           25082662-25082669,25082978-25083043,25083903-25084017,
           25084769-25084843,25085285-25085338,25085420-25085471,
           25087308-25087447,25087993-25088077,25088358-25088431,
           25088533-25088616,25088617-25088653,25089569-25089872,
           25090371-25090536,25091053-25091076
          Length = 427

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 240 SNWWSRSPRVRADVLLLCGQLRVRHVFTA-GPFADLT-LSTFIKILKGAYSYYT 395
           + WW   P + + V+L+CG + +  + T    FA++  L + +      Y +YT
Sbjct: 16  NQWWGSIPFITSGVILICGAIYLVCLLTGYDSFAEICFLPSVVASRFQVYRFYT 69


>01_05_0170 - 18888849-18889880
          Length = 343

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 180 CWHSNDVLFKNANVSLGPYESNWWS 254
           CWH +D LFK    +  PY   W+S
Sbjct: 223 CWHGSDELFK----ATTPYHHEWFS 243


>12_01_0092 + 726892-727247,727338-727347
          Length = 121

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 220 CLSARTKATGGREARASERTCCSCADNFAS 309
           C S      G   + A  RT CSC  N AS
Sbjct: 57  CCSGVRTLNGKASSSADRRTACSCLKNMAS 86


>11_01_0092 + 683869-684224,684315-684324
          Length = 121

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 220 CLSARTKATGGREARASERTCCSCADNFAS 309
           C S      G   + A  RT CSC  N AS
Sbjct: 57  CCSGVRTLNGKASSSADRRTACSCLKNMAS 86


>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
          Length = 625

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 326 RREDMSDAKLSAQEQHVRSDARASRPPVAFVRAER 222
           RR+ MS+A   A+EQ + +  + S   V FV+ ++
Sbjct: 116 RRQAMSNAARDAEEQQLAAQGKGSNNNVRFVQPDK 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,880,627
Number of Sequences: 37544
Number of extensions: 206601
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)