Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P21
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    37   1e-04
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.3  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 45  MFLYILMCSLMLCASAYQLTSATST-AXKLLMAEYLIFGIAQLFVFCWHSNDVLFKNANV 221
           + L++L  ++ L   AYQ T   +       +  YL++ + Q+F+ C   N ++ ++++V
Sbjct: 128 LLLHMLTTTITLTLLAYQATKIHAVDTYAASVVGYLLYSLGQVFMLCIFGNRLIEESSSV 187

Query: 222 SLGPYESNWWSRSPRVRADVLLL 290
               Y  +W+  S   +  V ++
Sbjct: 188 MEAAYSCHWYDGSEEAKTFVQIV 210


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 325 AVKTCLTRSCPHKSSTSALTRGLLDHQLLSYG-PRDTFAFLNK 200
           +++  LT SCP       L R +   ++ SYG   D   FL K
Sbjct: 151 SIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFLWK 193


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 325 AVKTCLTRSCPHKSSTSALTRGLLDHQLLSYG-PRDTFAFLNK 200
           +++  LT SCP       L R +   ++ SYG   D   FL K
Sbjct: 151 SIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFLWK 193


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 147 LIFGIAQLFVFCWHSNDVL 203
           L+FG+A   + CW+ +  L
Sbjct: 316 LLFGLANNTLSCWNEHQSL 334


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 215 ECVSRPVRKQLVVEKPARQSGRAALVRTTSRQTC 316
           E +S PV+K+ VVE      G   +     R TC
Sbjct: 101 EQMSWPVKKEAVVEGDLVLGGLMMVHERQDRLTC 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,349
Number of Sequences: 438
Number of extensions: 2246
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)