Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P21
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04460.1 68418.m00443 expressed protein                             31   0.51 
At3g06570.1 68416.m00763 kelch repeat-containing F-box family pr...    31   0.51 
At3g57790.1 68416.m06438 glycoside hydrolase family 28 protein /...    30   0.89 
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    28   3.6  
At1g69990.1 68414.m08055 leucine-rich repeat transmembrane prote...    28   4.8  
At3g15320.1 68416.m01934 hypothetical protein contains similarit...    27   8.3  

>At5g04460.1 68418.m00443 expressed protein
          Length = 863

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 223 LSARTKATGGREARASERTCCSCADN 300
           +SA T   G R +  S+ TCC C DN
Sbjct: 792 MSAETSEDGSRWSHVSKGTCCVCCDN 817


>At3g06570.1 68416.m00763 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 390

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 210 NANVSLGPYESNWWSRSPRVRADVLLLCGQLRVRHVFTAGPFAD 341
           ++NVS+    SN W  +PR+  ++  +   +  R +F  G +AD
Sbjct: 150 SSNVSILDCRSNTWREAPRLGVELTSVSASVLDRKIFVVGMYAD 193


>At3g57790.1 68416.m06438 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P15922
           Exo-poly-alpha-D-galacturonosidase precursor (EC
           3.2.1.82) (Exo-PG) {Erwinia chrysanthemi}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 490

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 192 NDVLFKNANVSLGPYESNWWSRS 260
           +DV F N N+S   Y+ +WW R+
Sbjct: 312 SDVTFSNINISTRYYDPSWWGRA 334


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 310 LTRSCPHKSSTSALTRGLLDHQLLSYGPRDTFAF-LNKTSLLCQQNTNS 167
           L+ +CP K   ++ T   LDHQ +  GP    ++ L K +   + N  S
Sbjct: 490 LSTACPIKLQNTSHTNSTLDHQTVEAGPTQVTSYSLQKKTRDTENNGGS 538


>At1g69990.1 68414.m08055 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GI:8777368 from [Arabidopsis thaliana]
          Length = 591

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +2

Query: 68  FFDALCQCVSTYISNEYSSXVIDGRIFDIRHRSTVRILLAQ**RFIQECECVSRPVRKQL 247
           F ++L + VS ++SN  S   ID RIF   +   +  +L    R    C  VSRP  + L
Sbjct: 501 FKESLVEWVSKHLSNGRSKDAIDRRIFGKGYDDEIMQVL----RIACSC-VVSRPKERPL 555

Query: 248 VVE 256
           +++
Sbjct: 556 MIQ 558


>At3g15320.1 68416.m01934 hypothetical protein contains similarity
           to hypothetical proteins of [Arabidopsis thaliana]
          Length = 287

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 335 ERSRREDMSDAKLSAQEQHVRSDARASRPP 246
           + ++R+   D   S+Q  HV  D+  SRPP
Sbjct: 173 KNAKRKKCGDGNASSQPIHVEDDSVMSRPP 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,780,236
Number of Sequences: 28952
Number of extensions: 171359
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)