Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P20
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   4e-20
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                41   0.001
SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)             36   0.029
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   4.3  

>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 83.4 bits (197), Expect(2) = 4e-20
 Identities = 37/66 (56%), Positives = 47/66 (71%)
 Frame = +3

Query: 447 AETIPTWLDLYLERIHKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGS 626
           A+ +  WL  +   + KL V  G+ PNHVLVNEY PGQGIMPH DG LF+P ++TIS+GS
Sbjct: 35  ADLLKQWLLKHATYLGKLPVFKGKAPNHVLVNEYEPGQGIMPHEDGPLFFPVVSTISLGS 94

Query: 627 HIVLKF 644
           H +L F
Sbjct: 95  HTLLDF 100



 Score = 32.3 bits (70), Expect(2) = 4e-20
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +3

Query: 261 NIEDHIVIKAEPTAYYISKFITEAEEQLIL 350
           ++  +IV +A PT YYI +F+TE+E+  +L
Sbjct: 9   DLTKYIVREAPPTVYYIPEFVTESEQADLL 38


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 522 PNHVLVNEYTPGQGIMPHLD-GNLFYPTITTISVGSHIVLKF 644
           P+ + VNEY PGQGI PH+D  + F   I ++S+G+ I + F
Sbjct: 231 PDQLTVNEYLPGQGIPPHVDTHSAFEDGICSLSLGAKISMDF 272


>SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)
          Length = 308

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +3

Query: 450 ETIPTWL-DLYLERIHKLNVMCGRRPNHVLVNEYTPGQGIMPHLDG-NLFYPTITTISVG 623
           + IP W+ +L + R+ K  ++     N  ++N+Y PG  I+ H+D  ++F   I + S  
Sbjct: 134 DDIPEWIYELVISRLEKAGIVPKDFINSAVINDYQPGGCIVSHIDPMHIFDRPIVSCSFF 193

Query: 624 SHIVLKF 644
           S   L F
Sbjct: 194 SSCTLSF 200


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -3

Query: 368 CCIYV*QYQLFFGFCDEFTNVICSRFSLYYYVIFNICYIC-HHYSLVFICTCS 213
           C  Y   Y   + +C  +    C  +  YY   +  CY   HHY   + C CS
Sbjct: 470 CYCYCYCYYYCYCYCYYYCYYYCYCYC-YYCCYYCYCYYYYHHYYCCYYCCCS 521


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,020,839
Number of Sequences: 59808
Number of extensions: 405592
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)