Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P18
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   3.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   6.7  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   6.7  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   8.8  

>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 9   NPTYIMEIN--KLSNFVGFFIIFSLMPLALSIKCWNCRSSTDPKCADPFDNST 161
           N TY +++     +++  + ++ +    A S K W C +S  P+CAD  DNS+
Sbjct: 330 NFTYTLDLIPCNATSWSAYSLLKNCSDCANSYKNWLC-ASVIPRCADINDNSS 381


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 263  PFTINFLSYFAAHAWFHSRQM 201
            PF   FLS+F AHA FH   M
Sbjct: 1161 PFD-RFLSFFYAHAGFHVNNM 1180


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 234 CGTCLVSFPANAKVPFLDCNQLSVL 160
           C  C+ S    A  PF DCN ++ L
Sbjct: 183 CYECIESDELRANCPFTDCNSINHL 207


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 141 DPFDNSTVPITDCNQEKGLSHLPGMKPSM 227
           D  D S +PIT  NQ++G  ++  +  SM
Sbjct: 126 DHSDTSPLPITSSNQKEGKKNVSSIDVSM 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,917
Number of Sequences: 5004
Number of extensions: 44347
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)