Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P18
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59248| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-12)               30   1.3  
SB_29297| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_39426| Best HMM Match : C4 (HMM E-Value=0)                          29   4.0  
SB_7191| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)                     28   5.3  
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       27   9.3  

>SB_59248| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-12)
          Length = 359

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/66 (22%), Positives = 28/66 (42%)
 Frame = +3

Query: 114 RSSTDPKCADPFDNSTVPITDCNQEKGLSHLPGMKPSMCRKIRQKVNGEWRYFRDCAYLG 293
           R   D  CA+   N +VP   C  +  +  + G  P++ + + +  N E  +F    Y  
Sbjct: 42  RKEVDKHCAEACPNRSVPCDHCKMKVTIGKMEGFNPAVIKHVTE--NREKHFFELGRYHQ 99

Query: 294 EVGIQG 311
            +  +G
Sbjct: 100 RLNTEG 105


>SB_29297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 302 ANFTQISTVTEVPPFTINFLSYFAAHAWFHSRQMRKSLFLIAISYRYCTIIERI 141
           A+ T+++  +    F   F +    HA+ HSR  RK ++   +  RY T++ ++
Sbjct: 43  ASRTRVTHTSSEHAFRTRFTNLHQGHAFIHSRH-RKFVYWSILLVRYLTLMSKV 95


>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
          Length = 188

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 231 GTCLVSFPANAKVPFLDCNQLSVLYYYRKDLRIW 130
           G+CL SF  N   PF++C+     +YY      W
Sbjct: 81  GSCLESFRPN---PFIECHGRGTCHYYANKYSFW 111


>SB_7191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 359 YKYIVCTSPHETKPFISLNANFTQISTVTEVPPFTINFLSYFAAHAWFH 213
           + + + TSPH  +  ++L  NF QIS+  +VP   +++LS      + H
Sbjct: 269 FVHTLMTSPHLARMLLTLLLNFLQISS-DDVPFLEVHWLSLCIIWRFLH 316


>SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)
          Length = 652

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 186 EKGLSHLPGMKPSMCRKIRQKVNGEWRYFRD 278
           ++ +S L G K  + RK++QK    W Y  D
Sbjct: 84  KRSISRLEGTKQMLLRKLQQKAENGWDYNSD 114


>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 231  GTCLVSFPANAKVPFLDCNQLSVLYYYRKDLRIW 130
            G+CL SF  N   PF +C+     +YY      W
Sbjct: 1598 GSCLESFRPN---PFTECHGRGTCHYYANKYSFW 1628


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 159  TVPITDCNQEKGLSHLPGMKPSMCRKIRQKVNG 257
            T  ITDCN+        GM     RKIRQ+  G
Sbjct: 5677 TTKITDCNRYSSTLTSDGMASLTIRKIRQEDGG 5709


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,511
Number of Sequences: 59808
Number of extensions: 311284
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)