Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P18
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At5g66710.1 68418.m08409 protein kinase, putative similar to pro...    27   7.6  
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ...    27   7.6  
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1...    27   7.6  

>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHG1a
           GI:3822225 from [Arabidopsis thaliana]; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 494

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 234 CGTCLVSFPANAKVPFLDCNQLSVLYYYRKDLRIWDRCWICSSNILYLER 85
           C  C  SF    K+  LDC          K L + + C IC S  L +E+
Sbjct: 442 CTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICKSEALVMEK 491


>At5g66710.1 68418.m08409 protein kinase, putative similar to
           protein kinase ATN1 GP|1054633 [Arabidopsis thaliana]
          Length = 405

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 63  IIFSLMPLALSIKCWNCRSSTDPKCADPFDNSTVPITDCNQEKGLSHLPGMKPSMCRKIR 242
           I +SL  L  S+      +S++ K     ++ST  +    QE+ +   PG+K S  +K++
Sbjct: 326 ITYSLTNLLRSLSSDTDATSSNSKANIATEDSTSSLV---QERVVCDCPGLKMSKTKKLK 382

Query: 243 QKVN 254
           +K N
Sbjct: 383 KKTN 386


>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
           identical to WIP2 protein [Arabidopsis thaliana]
           gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 383

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +3

Query: 90  LSIKCWNCRSSTDPKCADPFDNSTV-PITDCNQ-EKGLSHLPGMKPSMCRKIRQ--KVNG 257
           L + C+ C     P C +  D+    P+ D    +       G+KP MCRK  +   V G
Sbjct: 259 LRLPCYCCA----PGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 314

Query: 258 EWR-YFRDCAYL 290
           +WR + ++C  L
Sbjct: 315 DWRTHEKNCGKL 326


>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P14713
            Phytochrome B {Arabidopsis thaliana}
          Length = 1172

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 210  GMKPSMCRKIRQKVNGEWRYFRD 278
            G+  S+CRKI + +NGE +Y R+
Sbjct: 1115 GLGLSVCRKILKLMNGEVQYIRE 1137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,882
Number of Sequences: 28952
Number of extensions: 220254
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)