Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_P17
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ... 41 6e-04
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ... 40 0.001
At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak ... 40 0.001
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta... 38 0.004
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil... 36 0.018
At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak... 36 0.023
At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak ... 36 0.031
At3g10260.3 68416.m01230 reticulon family protein weak similarit... 35 0.041
At3g10260.2 68416.m01229 reticulon family protein weak similarit... 35 0.041
At3g10260.1 68416.m01228 reticulon family protein weak similarit... 35 0.041
At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low ... 33 0.22
At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak ... 31 0.50
At3g10915.2 68416.m01315 reticulon family protein low similarity... 31 0.50
At3g10915.1 68416.m01314 reticulon family protein low similarity... 31 0.50
At1g18600.1 68414.m02319 rhomboid family protein contains Pfam p... 28 6.2
>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 275
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +2
Query: 527 LWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
LW L+ +G CFN +TL + + LFT+P AY + +VD
Sbjct: 201 LWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239
>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251, SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 257
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 527 LWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVDA 646
LW L+ +G+C+N +TL + LFT+P Y + +VDA
Sbjct: 180 LWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDA 219
>At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 255
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +2
Query: 470 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
LR + L DL L V LW ++ VG FN +TL+ + ++ L T+P Y ++ +VD
Sbjct: 161 LRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVD 218
>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
Pfam profile PF02453: Reticulon
Length = 253
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 470 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
LR + L DL L LW ++ VG FN +TL+ + ++ L T+P Y ++ +VD
Sbjct: 161 LRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVD 218
>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
protein) {Rattus norvegicus}; contains Pfam profile
PF02453: Reticulon
Length = 271
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 470 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVDA 646
LR + D+ L LW L+ +G C++ +TL + + LFT+P Y + +VD+
Sbjct: 178 LREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDS 236
>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311; identical to cDNA RTNLB11
GI:32331878
Length = 200
Score = 35.9 bits (79), Expect = 0.023
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 509 LKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
L+ ++LW ++YVG N +TL+ +G + + P Y + +D
Sbjct: 128 LQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172
>At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 255
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 527 LWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
LW L+ VG+ N +TLI + + LFT+P Y + +VD
Sbjct: 176 LWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVD 214
>At3g10260.3 68416.m01230 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 267
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 527 LWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
LW VG+C N +T++ +G++ T+P Y + +VD
Sbjct: 193 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVD 231
>At3g10260.2 68416.m01229 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 527 LWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
LW VG+C N +T++ +G++ T+P Y + +VD
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVD 211
>At3g10260.1 68416.m01228 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 527 LWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
LW VG+C N +T++ +G++ T+P Y + +VD
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVD 211
>At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311, SP|Q64548 Reticulon 1
(Neuroendocrine-specific protein) {Rattus norvegicus};
contains Pfam profile PF02453: Reticulon
Length = 201
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +2
Query: 473 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVDANL 652
R +++ + + V+LW +++VG N +T++ LG + +P Y + +D L
Sbjct: 108 REIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKL 167
>At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 242
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/58 (22%), Positives = 33/58 (56%)
Frame = +2
Query: 470 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
LR + L D+ + + + LW ++ +G F+ ++L+ + ++ + T+P Y + ++D
Sbjct: 158 LRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEID 215
>At3g10915.2 68416.m01315 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 226
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 512 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
K + LW L+ +G+ + TL+ +G I T+P Y +++VD
Sbjct: 148 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 191
>At3g10915.1 68416.m01314 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 220
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 512 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYXMNKAQVD 643
K + LW L+ +G+ + TL+ +G I T+P Y +++VD
Sbjct: 142 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 185
>At1g18600.1 68414.m02319 rhomboid family protein contains Pfam
profile PF01694: Rhomboid family
Length = 336
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 44 RRSFLILTRYVKCQHARAQHPRYAPSSTPMPGFDPQRL 157
R++F L + + +H R + +PSS P+ FDP +L
Sbjct: 32 RQTFTSLYKPNQSRHFRTHYLPSSPSSPPVSRFDPSQL 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,262,558
Number of Sequences: 28952
Number of extensions: 137790
Number of successful extensions: 610
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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