Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P14
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    29   0.59 
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    25   7.2  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   9.5  

>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 441 QLXTVRRKAKITAEVFXISHKAKLLAAQIQRKV-VKSDFKINSCKELHNMLKGQYKSIAL 617
           Q   ++++ K        S KAK L  ++++K  +K++ +     EL ++++   K +  
Sbjct: 112 QRKKLQKERKAMKPFADTSLKAKSLWDKLRQKTSIKAEERKTIIAELFDLIRTNVKQLVF 171

Query: 618 THDLSRV 638
            HD+SRV
Sbjct: 172 KHDMSRV 178


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 547 DFTTFLCICAANNLALCE 494
           D TTF+C+C +  L+L E
Sbjct: 220 DLTTFVCVCISEFLSLYE 237


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 306 VKGFKKFTKNDKGSKFVKTKEKSNFSKDEAN 398
           +K  KKF   D     +KTK    FSKD A+
Sbjct: 64  LKKTKKFIAFDLDGTLIKTKSGRVFSKDAAD 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,206
Number of Sequences: 5004
Number of extensions: 27328
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)