Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P06
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    56   2e-10
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 56.4 bits (130), Expect = 2e-10
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
 Frame = +1

Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
           +F +  L    L  +  SG+ KP+ IQ + +P+   G DL+  A++G+GKT  F +  + 
Sbjct: 159 SFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH 218

Query: 487 KL--------NLNNGLQ--VMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVN 633
            L          NN  Q  V+I++PTRE+A QI D  K+  +++  + V  + GG S N
Sbjct: 219 NLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKF-AYNSTVKVAVIYGGTSTN 276


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 478 ALEKLNLNNGLQVMI 522
           A EKLN+N+GLQ+ +
Sbjct: 239 AYEKLNVNDGLQLWV 253


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 170 RNHPIFQNRINHFLKTAGY 226
           +NHP  +N INH     GY
Sbjct: 363 KNHPNSENYINHQNYVQGY 381


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 170 RNHPIFQNRINHFLKTAGY 226
           +NHP  +N INH     GY
Sbjct: 311 KNHPNSENYINHQNYVQGY 329


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 623 NPPITXSTFRPLWCDPICLITSHICAAISRVGVKII 516
           NP  T S    +W   I +  ++IC A  +   K++
Sbjct: 121 NPIHTSSYMTGIWVWLINISATYICYAFGKFSCKVM 156


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 623 NPPITXSTFRPLWCDPICLITSHICAAISRVGVKII 516
           NP  T S    +W   I +  ++IC A  +   K++
Sbjct: 354 NPIHTSSYMTGIWVWLINISATYICYAFGKFSCKVM 389


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 623 NPPITXSTFRPLWCDPICLITSHICAAISRVGVKII 516
           NP  T S    +W   I +  ++IC A  +   K++
Sbjct: 354 NPIHTSSYMTGIWVWLINISATYICYAFGKFSCKVM 389


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 528 TYTRNSSTDM*CY*TNRITPQGSEC 602
           T+TR+++T      T R TP  S C
Sbjct: 278 THTRHTTTSHNTRGTPRTTPASSRC 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,745
Number of Sequences: 336
Number of extensions: 2920
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)