Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_P06
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 91 1e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 78 1e-15
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 69 8e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 67 2e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 66 3e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 4e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 62 9e-11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 61 1e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 61 1e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 58 1e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 53 3e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 53 4e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 5e-08
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 52 7e-08
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 51 2e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 49 7e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 48 9e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 48 1e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 3e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 42 8e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 1e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 37 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 33 0.027
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 29 0.58
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.77
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 27 1.8
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 3.1
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 3.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.1
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 26 5.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 5.4
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 7.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 9.5
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 9.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.5
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 9.5
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 91.5 bits (217), Expect = 1e-19
Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +1
Query: 250 PHDIRNSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLL 429
P D+R +T DV F L L G+ +GF++PSPIQ +P+ G D+L
Sbjct: 28 PVDMR--PKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85
Query: 430 LEAKSGTGKTVVFSIIALEKLNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVE 606
AK+GTGKT F I +LEK++ +Q +IL PTRE+A Q V K +G H + V
Sbjct: 86 ARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGK-HMNVKVM 144
Query: 607 XVMGGLSVNEXIAK 648
GG ++ + I +
Sbjct: 145 VTTGGTTLRDDIIR 158
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 78.2 bits (184), Expect = 1e-15
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Frame = +1
Query: 271 TRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGT 450
T + DV V + F M L E L G+ + G++ PS +Q + G D++ +A+SGT
Sbjct: 12 TTSEDVNAVSS--FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGT 69
Query: 451 GKTVVFSIIALEKLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLS 627
GKT FSI L+ ++L+ Q +IL+PTRE+A QI +V+ +G H + +GG S
Sbjct: 70 GKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGD-HMNVQCHACIGGTS 128
Query: 628 VNEXIAK 648
V I K
Sbjct: 129 VGNDIKK 135
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 68.5 bits (160), Expect = 8e-13
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
TF M L L G+ + GF++PS IQ + D+L +A+SGTGKT FSI L+
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 487 KLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVE--XVMGGLSVNEXIA 645
K++ + Q +IL PTRE+A QI V+ +G +NVE +GG V + +A
Sbjct: 80 KIDTSLKQCQALILAPTRELAQQIQKVVVALGDL---MNVECHACIGGTLVRDDMA 132
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 67.3 bits (157), Expect = 2e-12
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Frame = +1
Query: 325 LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN- 501
LS L L +GF KP PIQ +P GFD++ +A +G+GKT+ F I LE N
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNV 188
Query: 502 --NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
+Q +++ PTRE+A QIC + I + V + GGL+V +
Sbjct: 189 DAKYVQALVVAPTRELAHQICQHFELI-KPSPNIRVMSITGGLAVQK 234
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 66.5 bits (155), Expect = 3e-12
Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F SM L++ L + GF+ P+PIQ +PL G D++ A++G+GKT F I +E
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 490 LN---LNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
L N+ + +IL+P RE+A Q V+K S L ++GG+S+ E
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDF-SKGTDLRSVAIVGGVSLEE 181
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 66.1 bits (154), Expect = 4e-12
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +1
Query: 295 VENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI 474
+ + F LL L + SGF+ PS +Q +P G D+L +AKSG GKT VF +
Sbjct: 48 IHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVL 107
Query: 475 IALEKLNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAKF 651
L+++ +G + V++L TRE+A QI + + + + GG+++ + + F
Sbjct: 108 STLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAF 167
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 61.7 bits (143), Expect = 9e-11
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Frame = +1
Query: 265 NSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKS 444
N++ T D++ F+ + LSE + GF+ + IQ +P G D+L AK+
Sbjct: 81 NASSTSDIE-----KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKT 135
Query: 445 GTGKTVVFSIIALE-----KLNLNNGLQVMILTPTREIAAQICDVIKQ-IGSHHKGLNVE 606
G+GKT+ F I +E K NG V+I++PTRE+A QI V K+ + HH+ +
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGI- 194
Query: 607 XVMGG 621
V+GG
Sbjct: 195 -VIGG 198
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 61.3 bits (142), Expect = 1e-10
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Frame = +1
Query: 274 RTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 453
+ + + + +F SM LS L GL + GF+ P+ IQ +PL G D++ A +G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 454 KTVVFSIIALEKLNLN----NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
KT F + LE+L +V+IL PTRE+A Q V +I S + V +GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS-FTDIMVCLCIGG 367
Query: 622 LSV 630
LS+
Sbjct: 368 LSL 370
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 61.3 bits (142), Expect = 1e-10
Identities = 30/95 (31%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Frame = +1
Query: 304 VTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL 483
++F S+ + ++ + + GF+K +P+Q + +PL DL++EA +G+GKT+ + +
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 484 EKLNLNN----GLQVMILTPTREIAAQICDVIKQI 576
+K+ + GL +I+ PTRE+A QI +V K++
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKEL 95
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 57.6 bits (133), Expect = 1e-09
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPL--GKCGFDLLLEAKSGTGKTVVFSIIA 480
+F + L L G+ S FQKPS IQ +PL +++ +++SGTGKT F++
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 481 LEKLNLNNGL-QVMILTPTREIAAQICDVIKQIGSH 585
L +++ + Q + L P+RE+A QI DV+ ++G +
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY 210
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 53.2 bits (122), Expect = 3e-08
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +1
Query: 361 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL-NLNNGLQVMILTPTR 537
GF+ P+PIQ +P+ D++ A++G+GKT F++ +++L N + ++L PTR
Sbjct: 65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTR 124
Query: 538 EIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
E+A QI + + IG G+ ++GG+ +
Sbjct: 125 ELAYQISEQFEAIGG-SIGVRSVVIVGGMDM 154
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 52.8 bits (121), Expect = 4e-08
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
TF+ L + F+KP+ +Q +PL G DL+ +A++G+GKT + I LE
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 487 KL-------NLNNGLQVMILTPTREIAAQICDVIKQI 576
L G+ ++L PTRE+A Q+ +V++++
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.4 bits (120), Expect = 5e-08
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F + L++ T L ++ F + IQ +P G D+L AK+G+GKT+ F + +E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 490 LNLN-----NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
L +GL ++++PTRE+A Q + + +IG H + ++GG + E
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLH-SFSAGLIIGGNNYKE 153
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 52.0 bits (119), Expect = 7e-08
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Frame = +1
Query: 274 RTRDVQIVENVTFTSML-LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGT 450
+ R + + VT S LS T+ + S G++KP+ IQ +P G D++ AK+G+
Sbjct: 407 KIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGS 466
Query: 451 GKTVVF------SIIALEKLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVE-- 606
GKT+ F I L G +I+TPTRE+A QI ++ K LN+
Sbjct: 467 GKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI---FRECKPFLKLLNIRAC 523
Query: 607 XVMGGLSVNEXIA 645
GG + + IA
Sbjct: 524 CAYGGAPIKDQIA 536
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
TF + L + GF+ P+PIQ P+ G D++ + +G+GKT+ + + A+
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 487 KLNL------NNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGL 624
+N +G V++L PTRE+A QI + G + N V GG+
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT-CVYGGV 233
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 48.8 bits (111), Expect = 7e-07
Identities = 31/109 (28%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
+F+ + +S + + L + +P+ IQ + G + + AK+G+GKT F++ +E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 487 KLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
K + + +G+ +ILTPTRE+A QI + +G+ + L ++GG+ +
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGA-NLNLKHALIVGGMDM 115
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.4 bits (110), Expect = 9e-07
Identities = 34/108 (31%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Frame = +1
Query: 325 LSEFTLXGLISSGFQKPSPIQLHGV-PLGKCGFDLLLEAKSGTGKTVVFSIIALE----- 486
LS L +GF+K +P+Q + + + +++AK+GTGKT+ F ++A +
Sbjct: 45 LSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKG 104
Query: 487 KLNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLS 627
K LN+ + +IL+PTRE+A QI + +++ ++ G+ V +GG S
Sbjct: 105 KPRLNSSKIHSVILSPTRELALQIFEEARKL-TYGTGIRVSYAIGGNS 151
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 48.0 bits (109), Expect = 1e-06
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Frame = +1
Query: 364 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN-LNNGL---QVMILTP 531
+++P+PIQ P G D++ A++G+GKTV F I AL+ LN L++ +V++++P
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 532 TREIAAQICDVIKQIGSHHKGLNVEXVM--GGLSVNE 636
TRE+A Q + + S +G N++ V+ GG +E
Sbjct: 245 TRELAIQ---TYENLNSLIQGTNLKAVVVYGGAPKSE 278
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTV--VFSIIAL 483
FTS L+ L + SG+ +P+P+Q + +P+ G DL+ A++G+GKT +F I++L
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.9 bits (94), Expect = 8e-05
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Frame = +1
Query: 364 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF---SIIALEKL------NLNNGLQV 516
+++PS IQ +P+ DL+ A++G+GKT F IIA+ KL N++ G
Sbjct: 269 YKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYA 328
Query: 517 MILTPTREIAAQI 555
++L PTRE+A QI
Sbjct: 329 VVLAPTRELAQQI 341
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 382 IQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN--NGLQVMILTPTREIAAQI 555
IQ + +P DLL A +G+GKT+ + L+KL L+ G + +I+ PTRE+ QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 8/63 (12%)
Frame = +1
Query: 421 DLLLEAKSGTGKTVVFSIIALEKL-----NLN---NGLQVMILTPTREIAAQICDVIKQI 576
D +EA++G+GKT+ + + +++L NL+ +G+ +I+ PTRE+ QI +V ++
Sbjct: 180 DAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKL 239
Query: 577 GSH 585
++
Sbjct: 240 NNN 242
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.027
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +1
Query: 391 HGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN--GLQVMILTPTREIAAQI 555
HG P+ G D+ + A +G+GKT+ + I ++ L+ L+ +++ PTRE+ Q+
Sbjct: 166 HG-PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQV 221
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 366 PKTISNSTSWCPTRQMWFRFVTRSKVWNWKNCCVFYNSIRKTKS 497
P T +SW P +Q + K+WN + CV +++I +S
Sbjct: 87 PPTFFLKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRS 130
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +1
Query: 415 GFDLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIA 546
GF +++ + +GK++++ I L+ L +N + PT+ +A
Sbjct: 326 GFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPTKSLA 369
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 427 LLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIAAQICDVIKQI 576
+L+AK G+T+V I + E++ LN G VM L R ++A C + ++
Sbjct: 28 ILQAKQ-LGETLVIGIHSDEEITLNKGPPVMTL-EERCLSANTCKWVDEV 75
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 409 KCGFDLLLEAKSGTGKTVVFSII 477
+CG ++L SGTGKT F+ +
Sbjct: 28 ECGLTIMLCGASGTGKTTFFNTL 50
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 421 DLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIAAQ 552
+LLL +G GKT + +++ L +++ L PT+ + Q
Sbjct: 126 NLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLLLQ 169
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 424 LLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTP 531
++L K+G+GK+ +F I+ LN+ V +++P
Sbjct: 2170 IILLGKTGSGKSQIFRILQSALLNIGIDCIVYVISP 2205
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 20 NPLKKTGYFPKLEHSTIFKRVSLQLALTTSNHF 118
+P + P ++ T K + LQ LTT +H+
Sbjct: 34 DPAEPESVIPVIKEKTAKKEIDLQYILTTHHHY 66
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 467 NTTVFPVPDFASSNKSKPHLPS 402
NT +P F+S+ K KPHL S
Sbjct: 240 NTQEVVLPSFSSNAKPKPHLSS 261
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 406 GKCGFDLLLEAKSGTGKTV 462
GKCG+ +L + G GKT+
Sbjct: 225 GKCGYSAILADEMGLGKTL 243
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 156 PKNSCGTIQYFRIESTTF*RQQAI 227
P NS ++Y +STTF RQ +I
Sbjct: 206 PSNSNSNVEYGPFDSTTFDRQLSI 229
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 511 QVMILTPTREIAAQICDVIKQIGSH 585
++++L P REIA Q+C + Q SH
Sbjct: 657 ELVLLLPPREIAKQLCILEFQSFSH 681
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 399 PTRQMWFRFVTRSKVWNWKN-CCVFYNSIRKTKS**WFASNDLDTYTRNSSTDM*CY 566
P +Q+ +R T + +N CC+ +NS + + DL T S + CY
Sbjct: 1147 PRQQIMYRIQTETAFGPDENLCCIDWNSQTRQSAIRLMGREDLTMGTLKSDAEKWCY 1203
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 394 GVPLGKCGFDLLLEAKSGTGKTVV 465
GV +G DL+L+A+ GT TVV
Sbjct: 233 GVVVGSKIIDLILKAEPGTAATVV 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,679
Number of Sequences: 5004
Number of extensions: 49592
Number of successful extensions: 196
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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