Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_P06
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 139 2e-33
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 89 3e-18
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 89 3e-18
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 76 2e-14
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 67 1e-11
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 66 2e-11
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 54 1e-07
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 54 1e-07
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 53 2e-07
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 45 5e-05
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 45 6e-05
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 43 2e-04
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 42 3e-04
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 36 0.029
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 34 0.087
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 34 0.087
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 32 0.35
SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0) 32 0.47
SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 139 bits (337), Expect = 2e-33
Identities = 69/122 (56%), Positives = 89/122 (72%), Gaps = 1/122 (0%)
Frame = +1
Query: 274 RTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 453
RT DV I E + F S+LLS L GL +GF+KPSPIQL +PLG+CG DL+ +AKSGTG
Sbjct: 3 RTTDVLIEEQIDFHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTG 62
Query: 454 KTVVFSIIALEK-LNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
KT VFS+IALE + +N +Q++ILTPTREIA Q+ DVI IG H+ GL + +GG+S+
Sbjct: 63 KTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYDGLACKVFIGGISL 122
Query: 631 NE 636
E
Sbjct: 123 EE 124
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 89.0 bits (211), Expect = 3e-18
Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Frame = +1
Query: 184 ISESNQPLFKDSRLSELPLCL*PHDIRNSTRTRDVQIVENVTFTSMLLSEFTLXGLISSG 363
+S +N L ++S + L L P D N +T DV + F L L G+ G
Sbjct: 10 VSVANSNL-ENSESWKANLKLPPKD--NRFKTSDVTATKGNEFEDYCLKRELLMGIFEKG 66
Query: 364 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN-LNNGLQVMILTPTRE 540
F KPSPIQ +P+ G D+L AK+GTGKT + + LE+ + N +Q ++L PTRE
Sbjct: 67 FDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRE 126
Query: 541 IAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
+A Q + ++G H G V GG S+ + I +
Sbjct: 127 LALQTSQICIELGK-HMGAQVMVTTGGTSLKDDILR 161
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 89.0 bits (211), Expect = 3e-18
Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Frame = +1
Query: 184 ISESNQPLFKDSRLSELPLCL*PHDIRNSTRTRDVQIVENVTFTSMLLSEFTLXGLISSG 363
+S +N L ++S + L L P D N +T DV + F L L G+ G
Sbjct: 10 VSVANSNL-ENSESWKANLKLPPKD--NRFKTSDVTATKGNEFEDYCLKRELLMGIFEKG 66
Query: 364 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN-LNNGLQVMILTPTRE 540
F KPSPIQ +P+ G D+L AK+GTGKT + + LE+ + N +Q ++L PTRE
Sbjct: 67 FDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRE 126
Query: 541 IAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
+A Q + ++G H G V GG S+ + I +
Sbjct: 127 LALQTSQICIELGK-HMGAQVMVTTGGTSLKDDILR 161
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 76.2 bits (179), Expect = 2e-14
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Frame = +1
Query: 274 RTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 453
R +++ E F+ +S+ TL GL+ +GF P+ IQ G+P+ G D+L AK+G+G
Sbjct: 40 RCKEIGSSEVEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSG 99
Query: 454 KTVVFSIIALE-----KLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMG 618
KT+ F I +E K +GL ++++PTRE+A Q +V+ +IG+ H L+ ++G
Sbjct: 100 KTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKH-DLSAGLIIG 158
Query: 619 G 621
G
Sbjct: 159 G 159
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 67.3 bits (157), Expect = 1e-11
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
+F + L+++ + ++ G +KP+ IQL+ VP G D + AK+G+GKT F++ L+
Sbjct: 8 SFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQ 67
Query: 487 KL-NLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
KL + G+ ++LTPTRE+A QI D K +G GL ++GGL +
Sbjct: 68 KLCDDPYGIFAVVLTPTRELAFQIADQFKVLG-RPIGLKEAVIVGGLDM 115
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 66.5 bits (155), Expect = 2e-11
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Frame = +1
Query: 355 SSGFQKPSPIQLHGV-PLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN-NGLQVMILT 528
+ GF+KPS IQ + P+ K G D++ +A+SGTGKT FSI L+ ++ Q ++L+
Sbjct: 14 TEGFEKPSAIQQRAIKPILK-GRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLS 72
Query: 529 PTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
PTRE+A QI V+ +G + + +GG ++ E I K
Sbjct: 73 PTRELANQIQKVVLALGD-YMSVQCHACIGGTNIGEDIRK 111
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F LL L ++ GF+ PS +Q +P G D++ +AKSG GKT VF + L++
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQ 108
Query: 490 LNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
L +G + V+++ TRE+A QI ++ + + + GG+++ +
Sbjct: 109 LEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKK 158
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F LL L ++ GF+ PS +Q +P G D++ +AKSG GKT VF + L++
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQ 108
Query: 490 LNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
L +G + V+++ TRE+A QI ++ + + + GG+++ +
Sbjct: 109 LEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKK 158
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 58.4 bits (135), Expect = 5e-09
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Frame = +1
Query: 325 LSEFTLXGLISSGFQKPSPIQLHGV-PLGKCGFDLLLEAKSGTGKTVVFSIIALEKL--- 492
+SE TL G+ GF + IQ + PL K G DLL AK+G+GKT+ F + +E L
Sbjct: 579 VSEKTLQGIKDMGFTTMTEIQHKSIAPLLK-GRDLLGAAKTGSGKTLAFLVPVVELLYKL 637
Query: 493 --NLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLS 627
NG V+I++PTRE++ Q V + + HH +MGG++
Sbjct: 638 QFKTRNGTGVIIISPTRELSLQTYGVARDLLKHH-NFTYGIIMGGVN 683
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 397 VPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN---GLQVMILTPTREIAAQICDVI 567
+PL G D++ A++G+GKT F I EKL + G++ +IL+PTRE+A Q I
Sbjct: 312 LPLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFI 371
Query: 568 KQIGSHHKGLNVEXVMGGLSVNEXIAKF 651
K++G GL ++GG SV +F
Sbjct: 372 KELG-RFTGLKSSVILGGDSVVATPGRF 398
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Frame = +1
Query: 361 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFS------IIALEKLNLNN----GL 510
G++ P+PIQ +P+G D++ A++G+GKT F+ I+ L K+ +N G
Sbjct: 120 GYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGP 179
Query: 511 QVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
+IL PTRE+A QI + I + G G+ V+GG
Sbjct: 180 YALILAPTRELAQQIEEEILKFG-RPLGIRTVSVIGG 215
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVP--LGKCGFDLLLEAKSGTGKTVVFSIIA 480
+F + LS G+ GF KPS IQ +P L +++ +++SGTGKT F +
Sbjct: 104 SFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFVLTM 163
Query: 481 LEKLNLNNGL-QVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
L +++ QV+ L+PT E+A Q V + +G H + + + G
Sbjct: 164 LSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKHCPHIKINYAVRG 211
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 53.6 bits (123), Expect = 1e-07
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Frame = +1
Query: 289 QIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGV--------PLGKC---------- 414
++VE+ F M L E L G+ + GF+KPS IQ + P C
Sbjct: 60 EVVES--FDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQEFSPSHVCYNQLNLTKNH 117
Query: 415 ----GFDLLLEAKSGTGKTVVFSIIALEKLNLN----NG---LQVMILTPTREIAAQICD 561
D++ +A+SGTGKT F+I L++++ N NG Q ++L PTRE+A QI
Sbjct: 118 YVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQK 177
Query: 562 VIKQIGSHHKGLNVEXVMGGLSVNE 636
V+ +G + + +GG +V E
Sbjct: 178 VVLALGD-YMHVKCHACIGGTNVRE 201
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Frame = +1
Query: 361 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL----NLNNGLQVMILT 528
GF P+PIQ +P+ G D+ A +GTGKT F + LE+L + ++V+++T
Sbjct: 29 GFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVIT 88
Query: 529 PTREIAAQ 552
PTRE+A Q
Sbjct: 89 PTRELAIQ 96
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
+F + E + + +G+++P+P+Q +P+ G DL+ A++G+GKT + + L
Sbjct: 480 SFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLT 539
Query: 487 KLNLNNGLQ-------VMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
L + GL + + PTRE+A QI ++ S H + V GG+SV
Sbjct: 540 SL-IKQGLNAPPRSPLALCVAPTRELAKQIYIEARKF-SDHTPIKVCVCYGGVSV 592
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Frame = +1
Query: 304 VTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF----- 468
++F E + + + +P+ IQ +P+ G D++ AK+G+GKT F
Sbjct: 517 ISFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPAL 576
Query: 469 -SIIALEKLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
I+ +L + +G V+I PTRE+ QI ++ G + ++V V GG
Sbjct: 577 VHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAY-NIHVVAVFGG 627
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 48.8 bits (111), Expect = 4e-06
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
+F L E L + + ++KP+P+Q + +P+ G D++ A++G+GKT F + +
Sbjct: 712 SFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKTAAFLLPVMT 771
Query: 487 KLNLNNGL-----------QVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVN 633
+ +N GL Q M + PTRE+A QI ++ +H L GG+SV+
Sbjct: 772 SM-MNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKF-AHGTMLRPVVCYGGVSVS 829
Query: 634 EXI 642
+
Sbjct: 830 HQL 832
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 45.2 bits (102), Expect = 5e-05
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F+ +S+ T+ L G PIQ G D++ +A++GTGKT+ F++ +EK
Sbjct: 75 FSKFRISQKTIDNLEDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEK 134
Query: 490 L-------NLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGL 624
L +V+++ PTRE+A Q+ + + + S+ L V + GG+
Sbjct: 135 LQDGKLSQKRGRAPKVLVMAPTRELAKQVGNEFENLKSN---LEVYCIYGGM 183
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 44.8 bits (101), Expect = 6e-05
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Frame = +1
Query: 361 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTRE 540
G KP PIQ +P LL+++++GTGK++VF + +++ + G +I+ PTRE
Sbjct: 179 GITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSVQ--DPGRGYGTIIVVPTRE 236
Query: 541 IAAQ-ICDVIKQIGSHHKGLNVEXVMG-GLSVNEXIAK 648
+A+Q + +V + +G K + V G LS E + K
Sbjct: 237 LASQMLYEVSRLLGD--KSIVASFVSGVDLSRQEKLLK 272
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F + L E L + +G++KP+P+Q + +P+ K DL+ A++G+GKT F I L +
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSR 936
Query: 490 L 492
+
Sbjct: 937 I 937
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +1
Query: 421 DLLLEAKSGTGKTVVFSIIALEKLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGL 597
D++ A++G+GKT F++ L+ L N L +ILTPTRE+A QI + + +GS G+
Sbjct: 3 DVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGS-GIGV 61
Query: 598 NVEXVMGGLSV 630
++GG+ +
Sbjct: 62 KCAVIVGGIDM 72
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Frame = +1
Query: 349 LISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI----IALEKLNLNNG--L 510
L FQ P+PIQ+ + G D++ A++G+GKT+ +S+ + K N G
Sbjct: 87 LAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTP 146
Query: 511 QVMILTPTREIAAQI 555
+ILTPTRE+ Q+
Sbjct: 147 VALILTPTRELMQQV 161
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 36.7 bits (81), Expect = 0.016
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 21/117 (17%)
Frame = +1
Query: 340 LXGLISSGFQKPSPIQLHGVPLGKCGF-DLLLEAKSGTGKTVVFSIIALEKLNL------ 498
L L GF KP+PIQ +P D++ A++G+GKT+ F I ++ +
Sbjct: 142 LRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKA 201
Query: 499 ------------NNG--LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLS 627
+ G L +I+ PTRE+A Q+ D + + + + + V ++GG++
Sbjct: 202 EQSPSDKESDLESQGYPLLALIMAPTRELALQVKDHLVK-AAKYTSVKVAAIVGGMA 257
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKT 459
+F L E L + + ++KP+P+Q + +P+ G D++ A++G+GKT
Sbjct: 135 SFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 34.3 bits (75), Expect = 0.087
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 511 QVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
Q ++L+PTRE+A QI V+ +G + + +GG ++ E I K
Sbjct: 5 QALVLSPTRELANQIQKVVLALGD-YMSVQCHACIGGTNIGEDIRK 49
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 34.3 bits (75), Expect = 0.087
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +1
Query: 349 LISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILT 528
L + G+ P+PIQ+ +P+ G D+++ A +G+GK + S G+QV++ T
Sbjct: 211 LSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKLLPSS--------PEMGVQVIVAT 262
Query: 529 PTRE---IAAQICDVIKQIG 579
P R I+ Q D+ IG
Sbjct: 263 PGRMVEIISRQAVDLTHVIG 282
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 490 LNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
L +G V++L PTRE+A Q+ +V +G H K L + GG
Sbjct: 127 LQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCK-LRSTCIYGG 169
>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
Length = 373
Score = 31.9 bits (69), Expect = 0.47
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Frame = +1
Query: 97 FDHIQPFHLN*IENYFNEKSQRTLAEPSNISESNQPLFKDSRLSELPLCL*PHDIRNSTR 276
F H+ + N + +EK EP + S + + D + P + D R +T
Sbjct: 131 FVHVSSTYANCDRDVVDEKIYPPSIEPEKLISSLEWMSDDMVKAITPYVI---DQRPNTY 187
Query: 277 TRDVQIVENVTF--TSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLL 429
T + E+V S L +I + F++P P+ G+P+ CG +L
Sbjct: 188 TFTKSLAEHVLLQEASGLPVSIFRPSIIGASFKEPLPVPSDGIPVYNCGTGVL 240
>SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 19 KSLKKNRLFPKARTLNYF*TSIF 87
K L KNR FP+ R+L Y T+IF
Sbjct: 532 KDLAKNRRFPQTRSLPYKETNIF 554
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,291,650
Number of Sequences: 59808
Number of extensions: 344181
Number of successful extensions: 952
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -