Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_P06
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 98 5e-21
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 98 5e-21
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 95 3e-20
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 95 3e-20
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 94 6e-20
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 78 6e-15
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 77 8e-15
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 75 3e-14
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 73 1e-13
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 72 4e-13
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 71 5e-13
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 70 1e-12
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 70 1e-12
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 69 3e-12
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 66 2e-11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 65 3e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 65 3e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 65 4e-11
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 61 7e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 60 1e-09
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 60 1e-09
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 59 2e-09
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 59 3e-09
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 58 5e-09
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 58 5e-09
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 58 7e-09
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 58 7e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 57 1e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 56 3e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 56 3e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 55 5e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 54 6e-08
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 54 8e-08
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 54 1e-07
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 54 1e-07
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 54 1e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 53 1e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 52 4e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 51 8e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 50 1e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 50 1e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 50 2e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 49 2e-06
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 49 2e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 49 2e-06
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 48 5e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 48 7e-06
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 47 9e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 47 9e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 47 1e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 47 1e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 44 1e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 44 1e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 43 2e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 43 2e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 40 0.001
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 39 0.003
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 36 0.023
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 35 0.041
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 34 0.071
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 33 0.16
At1g01430.1 68414.m00058 expressed protein similar to hypothetic... 29 3.5
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 28 6.2
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P... 27 8.2
At1g34610.1 68414.m04301 Ulp1 protease family protein contains P... 27 8.2
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 97.9 bits (233), Expect = 5e-21
Identities = 51/126 (40%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +1
Query: 274 RTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 453
RT DV + F L L G+ GF++PSPIQ +P+ G D+L AK+GTG
Sbjct: 121 RTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTG 180
Query: 454 KTVVFSIIALEKLNL-NNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
KT F I LEK++ NN +Q +I+ PTRE+A Q V K++G H K + V GG S+
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSL 239
Query: 631 NEXIAK 648
+ I +
Sbjct: 240 KDDIMR 245
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 97.9 bits (233), Expect = 5e-21
Identities = 51/126 (40%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +1
Query: 274 RTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 453
RT DV + F L L G+ GF++PSPIQ +P+ G D+L AK+GTG
Sbjct: 121 RTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTG 180
Query: 454 KTVVFSIIALEKLNL-NNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
KT F I LEK++ NN +Q +I+ PTRE+A Q V K++G H K + V GG S+
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSL 239
Query: 631 NEXIAK 648
+ I +
Sbjct: 240 KDDIMR 245
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 95.5 bits (227), Expect = 3e-20
Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 1/169 (0%)
Frame = +1
Query: 145 NEKSQRTLAEPSNISESNQPLFKDSRLSELPLCL*PHDIRNSTRTRDVQIVENVTFTSML 324
NE Q+T +P S++N +K + L L P D R +T DV + F
Sbjct: 80 NEVVQQT-TQPEASSDANGQDWKAT------LRLPPPDTRY--QTADVTATKGNEFEDYF 130
Query: 325 LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN 504
L L G+ GF+KPSPIQ +P+ G D+L AK+GTGKT F I LEK++ NN
Sbjct: 131 LKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNN 190
Query: 505 G-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
+Q MIL PTRE+A Q V K++ S + + V GG S+ + I +
Sbjct: 191 NVIQAMILVPTRELALQTSQVCKEL-SKYLNIQVMVTTGGTSLRDDIMR 238
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 95.5 bits (227), Expect = 3e-20
Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 1/169 (0%)
Frame = +1
Query: 145 NEKSQRTLAEPSNISESNQPLFKDSRLSELPLCL*PHDIRNSTRTRDVQIVENVTFTSML 324
NE Q+T +P S++N +K + L L P D R +T DV + F
Sbjct: 80 NEVVQQT-TQPEASSDANGQDWKAT------LRLPPPDTRY--QTADVTATKGNEFEDYF 130
Query: 325 LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN 504
L L G+ GF+KPSPIQ +P+ G D+L AK+GTGKT F I LEK++ NN
Sbjct: 131 LKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNN 190
Query: 505 G-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
+Q MIL PTRE+A Q V K++ S + + V GG S+ + I +
Sbjct: 191 NVIQAMILVPTRELALQTSQVCKEL-SKYLNIQVMVTTGGTSLRDDIMR 238
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 94.3 bits (224), Expect = 6e-20
Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
Frame = +1
Query: 136 NYFNEKSQRTLAEPSNISESNQPLFKDSRLSELPLCL*PHDIRNSTRTRDVQIVENVTFT 315
+Y +E + +E IS+SN +K + +LP P D N +T DV + F
Sbjct: 108 SYIDEVEKTVQSEA--ISDSNNEDWKATL--KLP----PRD--NRYQTEDVTATKGNEFE 157
Query: 316 SMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN 495
L L G+ GF+KPSPIQ +P+ G D+L AK+GTGKT F I LEK++
Sbjct: 158 DYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKID 217
Query: 496 -LNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
NN +Q +IL PTRE+A Q V K++ + K + V GG S+ + I +
Sbjct: 218 PENNVIQAVILVPTRELALQTSQVCKELSKYLK-IEVMVTTGGTSLRDDIMR 268
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 77.8 bits (183), Expect = 6e-15
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHG-VPLGKCGFDLLLEAKSGTGKTVVFSIIAL 483
+F +M L E L G+ + GF+KPS IQ G VP K G D++ +A+SGTGKT F L
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGVL 98
Query: 484 EKLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
++L+ + Q ++L PTRE+A QI V++ +G + G+ V +GG SV E
Sbjct: 99 QQLDFSLIQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVRE 149
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 77.4 bits (182), Expect = 8e-15
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHG-VPLGKCGFDLLLEAKSGTGKTVVFSIIAL 483
+F +M L E L G+ + GF+KPS IQ G VP K G D++ +A+SGTGKT F L
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGVL 98
Query: 484 EKLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
++L+ Q ++L PTRE+A QI V++ +G ++G+ V +GG SV E
Sbjct: 99 QQLDYALLQCQALVLAPTRELAQQIEKVMRALGD-YQGVKVHACVGGTSVRE 149
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 75.4 bits (177), Expect = 3e-14
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGV-PLGKCGFDLLLEAKSGTGKTVVFSIIAL 483
+F +M L L G+ + GF+KPS IQ G+ P K G D++ +A+SGTGKT F L
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK-GLDVIQQAQSGTGKTATFCSGVL 100
Query: 484 EKLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
++L+++ Q ++L PTRE+A QI V++ +G + G+ + +GG SV E
Sbjct: 101 QQLDISLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKAQACVGGTSVRE 151
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 73.3 bits (172), Expect = 1e-13
Identities = 42/116 (36%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHG-VPLGKCGFDLLLEAKSGTGKTVVFSIIAL 483
+F M +++ L G+ G++KPS IQ VP+ K G D++ +A+SGTGKT + +I
Sbjct: 23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK-GRDVIAQAQSGTGKTSMIAISVC 81
Query: 484 EKLNLNN-GLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
+ +N+++ +QV++L+P+RE+A+Q I+ IG+ H + +GG S+ E I K
Sbjct: 82 QIVNISSRKVQVLVLSPSRELASQTEKTIQAIGA-HTNIQAHACIGGKSIGEDIKK 136
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 71.7 bits (168), Expect = 4e-13
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
TF + LS L + G++KP+PIQ +PL G DL A +G+GKT F++ LE
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 487 KLNLNN----GLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
+L +V+ILTPTRE+A QI +I+ + + + ++GGLSV E
Sbjct: 228 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL-AQFTDIKCGLIVGGLSVRE 280
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 71.3 bits (167), Expect = 5e-13
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Frame = +1
Query: 295 VENVT-FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFS 471
+E +T F M + E L G+ GF+KPS IQ V G D++ +A+SGTGKT + +
Sbjct: 31 IEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIA 90
Query: 472 IIALEKLNLNN-GLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
+ + ++ ++ +Q +IL+PTRE+A Q I+ IG H + +GG SV E I K
Sbjct: 91 LSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGL-HANIQAHACIGGNSVGEDIRK 149
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F LL L ++ SGF+ PS +Q +P G D++ +AKSG GKT VF + L++
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 490 LNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
+ + G + ++L TRE+A QIC+ + ++ V GG+++
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F LL L ++ SGF+ PS +Q +P G D++ +AKSG GKT VF + L++
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 490 LNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
+ + G + ++L TRE+A QIC+ + ++ V GG+++
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 68.9 bits (161), Expect = 3e-12
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Frame = +1
Query: 256 DIRNSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLE 435
D + + I+ N TF S+ LS+ T + GF + + IQ +P G D+L
Sbjct: 138 DKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGA 197
Query: 436 AKSGTGKTVVFSIIALE-----KLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLN 600
A++G+GKT+ F I A+E K NG V+++ PTRE+A Q V K++ +H
Sbjct: 198 ARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYH-SQT 256
Query: 601 VEXVMGG 621
V V+GG
Sbjct: 257 VGKVIGG 263
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 66.1 bits (154), Expect = 2e-11
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Frame = +1
Query: 292 IVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFS 471
I+ NVTF S+ LSE T + GFQ + IQ + G D+L A++G+GKT+ F
Sbjct: 85 IMTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFL 144
Query: 472 IIAL-----EKLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
I A+ E+ + NG V+++ PTRE+A Q +V +++ HH V V+GG
Sbjct: 145 IPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHH-SQTVSMVIGG 198
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 65.3 bits (152), Expect = 3e-11
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F + +S+ T GL + + + +Q +P CG D+L A++G+GKT+ F I LEK
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 490 LNL-----NNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
L+ +G+ +I++PTRE+AAQ V+ ++G HK + ++GG
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHK-FSAGLLIGG 180
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 65.3 bits (152), Expect = 3e-11
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F S+ L + G++ P+PIQ +PL G D++ A++G+GKT F I LEK
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 490 LNLN---NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
L + G++ +IL+PTR++A Q K++G L V ++GG S+ +
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGK-FTDLRVSLLVGGDSMED 140
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 64.9 bits (151), Expect = 4e-11
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F + L+E+ + G +KP+P+Q H VP G D+L A++G+GKT F++ L +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 490 LNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
L + G+ +++TPTRE+A Q+ + K +GS L ++GG+ +
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKALGS-CLNLRCSVIVGGMDM 166
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 60.9 bits (141), Expect = 7e-10
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 9/154 (5%)
Frame = +1
Query: 187 SESNQPLFKDSRLSELPLCL*PHDIRNSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGF 366
S+ ++PL K S PL + +T D + F LS TL G+ +GF
Sbjct: 49 SDVDEPLIKKPA-STTPL------VTQIAKTSD-SYLSKTRFDQFPLSPLTLKGIEDAGF 100
Query: 367 QKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL---------NLNNGLQVM 519
+ + +Q +PL G D+L +AK+GTGKTV F + ++E + N + + V+
Sbjct: 101 KTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVL 160
Query: 520 ILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
++ PTRE+A Q + +H + V+ V+GG
Sbjct: 161 VVCPTRELACQAAAEANILLKYHPSIGVQVVIGG 194
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 60.1 bits (139), Expect = 1e-09
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 9/116 (7%)
Frame = +1
Query: 316 SMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL- 492
S L SE L + +G++KPSPIQ+ +PLG D++ A++G+GKT F + L +
Sbjct: 318 SKLTSEL-LKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYIS 376
Query: 493 --------NLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNE 636
N G +++ PTRE+A QI + + +H+ G V ++GG S+ E
Sbjct: 377 RLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF-AHYLGFRVTSIVGGQSIEE 431
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 12/116 (10%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKC--GFDLLLEAKSGTGKTVVFSIIAL 483
F +S TL L +SG K + +Q L +C G D L++AK+GTGK++ F + A+
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQ--DATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
Query: 484 EKL--NLNNG--------LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
E + +N+G + V+IL PTRE+A+QI K + +H G+ V+ ++GG
Sbjct: 435 ETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGG 490
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 59.3 bits (137), Expect = 2e-09
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Frame = +1
Query: 304 VTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL 483
+TF S L L L+S+GF P+PIQ P+ D++ AK+G+GKT+ + I A
Sbjct: 435 ITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF 494
Query: 484 EKL-----NLNNGLQVMILTPTREIAAQICDVIKQIG 579
L + NG V+IL PTRE+A QI D + G
Sbjct: 495 ILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFG 531
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
+F + ++ L + +GF +P+PIQ G P+ G DL+ A++G+GKT+ + + A+
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 487 KLNL------NNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGL 624
+N +G V++L PTRE+A QI + GS K + + GG+
Sbjct: 160 HVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSK-IKTTCIYGGV 210
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 58.0 bits (134), Expect = 5e-09
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 12/116 (10%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKC--GFDLLLEAKSGTGKTVVFSIIAL 483
F +S TL L +SG K + +Q L +C G D L++AK+GTGK++ F + A+
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQ--DATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
Query: 484 EKL--NLNNGLQV--------MILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
E + +N+G V +IL PTRE+A+QI K + H G+ V+ ++GG
Sbjct: 388 ETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGG 443
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 58.0 bits (134), Expect = 5e-09
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Frame = +1
Query: 364 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL-----EKLNLNNGLQ----- 513
F+KPSPIQ H P G DL+ AK+G+GKT+ F I A+ + + G +
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 514 VMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIA 645
++L+PTRE+A QI DV+++ G GL V GG S I+
Sbjct: 194 CLVLSPTRELAVQISDVLREAG-EPCGLKSICVYGGSSKGPQIS 236
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 57.6 bits (133), Expect = 7e-09
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Frame = +1
Query: 340 LXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL------EKLNLN 501
L + GF +P+PIQ G P+ G DL+ A++G+GKT+ + + AL +L +
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD 236
Query: 502 NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
+G V+IL PTRE+A QI + ++ G G+ + GG
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGL-RSGVRSTCIYGG 275
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 57.6 bits (133), Expect = 7e-09
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Frame = +1
Query: 340 LXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL------EKLNLN 501
L + GF +P+PIQ G P+ G DL+ A++G+GKT+ + + AL +L +
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD 236
Query: 502 NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
+G V+IL PTRE+A QI + ++ G G+ + GG
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGL-RSGVRSTCIYGG 275
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 56.8 bits (131), Expect = 1e-08
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
TF + L E + + KP+P+Q H +P+ G DL+ A++G+GKT F +
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219
Query: 487 KLNLNNGLQ-----------VMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVN 633
+ + +Q +IL+PTRE+A+QI D K+ S+ G+ V GG +N
Sbjct: 220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKF-SYQTGVKVVVAYGGTPIN 278
Query: 634 EXI 642
+ +
Sbjct: 279 QQL 281
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 489
F LS +L + +GF+ + +Q +P+ G D+L +AK+GTGKTV F + A+E
Sbjct: 384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443
Query: 490 L---------NLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
+ + + V+++ PTRE+A+Q + +H + V+ V+GG
Sbjct: 444 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGG 496
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 55.6 bits (128), Expect = 3e-08
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF------ 468
TF + L E + + KP+P+Q + +P+ G DL+ A++G+GKT F
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 469 SIIALEKLNLNNGLQ-----VMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVN 633
I+ + + G++ +IL+PTRE+A QI D ++ S+ G+ V GG VN
Sbjct: 207 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKF-SYQTGVKVVVAYGGTPVN 265
Query: 634 EXI 642
+ I
Sbjct: 266 QQI 268
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 54.8 bits (126), Expect = 5e-08
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Frame = +1
Query: 265 NSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKS 444
+ TR + + F LS +L + +G++ + +Q +P+ G D+L +AK+
Sbjct: 41 DKTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKT 100
Query: 445 GTGKTVVFSIIALEKL---------NLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGL 597
GTGKTV F + ++E + N + +++ PTRE+A Q + +H +
Sbjct: 101 GTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSI 160
Query: 598 NVEXVMGG 621
V+ V+GG
Sbjct: 161 GVQVVIGG 168
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 54.4 bits (125), Expect = 6e-08
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Frame = +1
Query: 304 VTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL 483
+TFTS L L L ++G+ P+PIQ+ +P G LL A +G+GKT F + +
Sbjct: 110 LTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169
Query: 484 EKLNLNNGLQ---------VMILTPTREIAAQICDVIKQIGSHHKGL--NVEXVMGG 621
+ + M+L PTRE+ Q+ D K +G KGL V+GG
Sbjct: 170 SRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG---KGLPFKTALVVGG 223
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 54.0 bits (124), Expect = 8e-08
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Frame = +1
Query: 280 RDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKT 459
R V+ E+ F+S ++S + ++KP+ IQ +P+ G D++ AK+G+GKT
Sbjct: 225 RPVKTFEDCGFSSQIMS-----AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKT 279
Query: 460 VVF------SIIALEKLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
F I+ +L + G +I PTRE+A QI K+ + GL V V GG
Sbjct: 280 AAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAY-GLRVSAVYGG 338
Query: 622 LSVNE 636
+S +E
Sbjct: 339 MSKHE 343
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Frame = +1
Query: 340 LXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI---IALEKLNLNN-- 504
L ++S+GF P+PIQ P+ G D++ AK+G+GKT+ + I + L+++ ++
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM 229
Query: 505 GLQVMILTPTREIAAQICDVIKQIG 579
G +++L+PTRE+A QI + + G
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFG 254
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Frame = +1
Query: 340 LXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI---IALEKLNLNN-- 504
L ++S+GF P+PIQ P+ G D++ AK+G+GKT+ + I + L+++ ++
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM 229
Query: 505 GLQVMILTPTREIAAQICDVIKQIG 579
G +++L+PTRE+A QI + + G
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFG 254
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Frame = +1
Query: 340 LXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI---IALEKLNLNN-- 504
L ++S+GF P+PIQ P+ G D++ AK+G+GKT+ + I + L+++ ++
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM 229
Query: 505 GLQVMILTPTREIAAQICDVIKQIG 579
G +++L+PTRE+A QI + + G
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFG 254
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 53.2 bits (122), Expect = 1e-07
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Frame = +1
Query: 325 LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN 504
LSE + L SGF+ +P+Q +P D++++A +G+GKT+ F + +E + +N
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 505 GL-----QVM--ILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
QVM I++PTRE++AQI V + S +N ++GG V
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREV 131
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = +1
Query: 334 FTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN--LNNG 507
+ L L GF++P+PIQ +P+ G + A +G+GKT F L KL +G
Sbjct: 151 YILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDG 210
Query: 508 LQVMILTPTREIAAQ 552
++ +IL+P RE+AAQ
Sbjct: 211 IRAVILSPARELAAQ 225
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 50.8 bits (116), Expect = 8e-07
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI---IA 480
F S L+ + S+GF PSPIQ P+ D++ AK+G+GKT+ + I +
Sbjct: 231 FNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH 290
Query: 481 LEKLNLNN--GLQVMILTPTREIAAQI 555
L++++ ++ G +++L+PTRE+A QI
Sbjct: 291 LQRIHNDSRMGPTILVLSPTRELATQI 317
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.0 bits (114), Expect = 1e-06
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Frame = +1
Query: 256 DIRNSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLE 435
DI T DV N TF + L + + + +P+P+Q H +P+ DL+
Sbjct: 136 DIPVETSGGDVPPPVN-TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 194
Query: 436 AKSGTGKTVVFSIIALEKLNLNNGLQ-----------VMILTPTREIAAQICDVIKQIGS 582
A++G+GKT F + + + ++ +IL+PTRE+A QI D K+ S
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF-S 253
Query: 583 HHKGLNVEXVMGGLSVNEXI 642
+ G+ V GG +++ +
Sbjct: 254 YQTGVKVVVAYGGTPIHQQL 273
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.0 bits (114), Expect = 1e-06
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Frame = +1
Query: 256 DIRNSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLE 435
DI T DV N TF + L + + + +P+P+Q H +P+ DL+
Sbjct: 136 DIPVETSGGDVPPPVN-TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 194
Query: 436 AKSGTGKTVVFSIIALEKLNLNNGLQ-----------VMILTPTREIAAQICDVIKQIGS 582
A++G+GKT F + + + ++ +IL+PTRE+A QI D K+ S
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF-S 253
Query: 583 HHKGLNVEXVMGGLSVNEXI 642
+ G+ V GG +++ +
Sbjct: 254 YQTGVKVVVAYGGTPIHQQL 273
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
Frame = +1
Query: 325 LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN 504
LSE + L SGF+ +P+Q +P D++++A +G+GKT+ F + +E + +N
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 505 GL-----QVM--ILTPTREIAAQICDVIKQI 576
QVM I++PTRE++AQI V + +
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQIHKVARAV 114
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 331 EFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN-LNNG 507
E L + GF P+ IQ +P G D +L A++G+GKT+ + ++ +N +
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 508 LQVMILTPTREIAAQICDVIKQIGS 582
+Q +I+ PTRE+ Q+ V + + +
Sbjct: 145 VQAVIVVPTRELGMQVTKVARMLAA 169
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF----SII 477
F M L L G P+PIQ+ G+P+ G D++ A +G+GKT+VF I+
Sbjct: 99 FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIIL 158
Query: 478 ALEK-----LNLNNGLQVMILTPTREIAAQICDVIKQ 573
AL++ + G +++ P+RE+A Q DV++Q
Sbjct: 159 ALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQ 195
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Frame = +1
Query: 361 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE-------KLNLNNGLQVM 519
GF+ P+ +Q +P+ G D+L+ A +GTGKT+ + + K++ ++G +
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 520 ILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
++ PTRE+ Q+ + ++++ + VMGG
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGG 142
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +1
Query: 421 DLLLEAKSGTGKTVVFSIIALEKLNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGL 597
D++ +AKSG GKT VF + L+++ + G + ++L TRE+A QIC+ + ++
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 598 NVEXVMGGLSV 630
V GG+++
Sbjct: 62 KVSVFYGGVNI 72
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 47.6 bits (108), Expect = 7e-06
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Frame = +1
Query: 280 RDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKT 459
R +Q TS +L TL L ++KP PIQ +P+ G D + AK+G+GKT
Sbjct: 393 RPIQFWHQTGLTSKILD--TLKKL---NYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKT 447
Query: 460 VVFSIIALEKL------NLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGG 621
+ F + L + +G +++ PTRE+ QI I++ S G+ V GG
Sbjct: 448 LGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKF-SKALGIICVPVYGG 506
Query: 622 LSVNEXIAK 648
V + I++
Sbjct: 507 SGVAQQISE 515
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 47.2 bits (107), Expect = 9e-06
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Frame = +1
Query: 310 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI----I 477
F M L L G +P+PIQ+ G+P+ G D++ A +G+GKT+VF + I
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
Query: 478 ALEK-----LNLNNGLQVMILTPTREIAAQICDVIKQ 573
AL++ + G +I+ P+RE+A Q +V++Q
Sbjct: 208 ALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQ 244
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 47.2 bits (107), Expect = 9e-06
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Frame = +1
Query: 364 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL------NLNNGLQVMIL 525
++KP PIQ +P+ G D + AK+G+GKT+ F + L + +G +++
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 608
Query: 526 TPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSVNEXIAK 648
PTRE+ QI I++ S G+ V GG V + I++
Sbjct: 609 APTRELVQQIHSDIRKF-SKPLGIRCVPVYGGSGVAQQISE 648
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Frame = +1
Query: 325 LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGF-DLLLEAKSGTGKTVVFSIIALEKLNLN 501
LS + L S F+ +P+Q +PL C + D+ ++A +G+GKT+ F + +E L +
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPL-LCSYKDVAVDAATGSGKTLAFVVPLVEILRRS 81
Query: 502 NGL-----QVM--ILTPTREIAAQICDVIKQIGSHHKGLNVEXVMGGLSV 630
QVM I++PTRE++ QI +V + S +N ++GG V
Sbjct: 82 TSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREV 131
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 46.8 bits (106), Expect = 1e-05
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Frame = +1
Query: 265 NSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKS 444
+S R + ++VEN F + LSE + L + P+ IQ G+P ++L + +
Sbjct: 101 SSIRKKSKKLVEN--FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHT 158
Query: 445 GTGKTVVF--SIIAL---EKLNLNNGL-----QVMILTPTREIAAQICDVIKQIGSHHKG 594
G+GKT+ + I+ L ++ NL + ++L PTRE++ Q+ V K I SHH
Sbjct: 159 GSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSI-SHHAR 217
Query: 595 LNVEXVMGG 621
V GG
Sbjct: 218 FRSILVSGG 226
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Frame = +1
Query: 298 ENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSII 477
+ + + + +S + L S G +K PIQ + G D++ A++GTGKT+ F I
Sbjct: 102 DGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP 161
Query: 478 ALEKL---NLNNGL----QVMILTPTREIAAQI 555
++K+ N +G ++L PTRE+A Q+
Sbjct: 162 IIDKIIKYNAKHGRGRNPLCLVLAPTRELARQV 194
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Frame = +1
Query: 298 ENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSII 477
+ + + +S + L G +K PIQ + G D++ A++GTGKT+ F I
Sbjct: 114 DGLAIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP 173
Query: 478 ALEKL---NLNNGL----QVMILTPTREIAAQI 555
++K+ N +G Q ++L PTRE+A Q+
Sbjct: 174 IIDKIIKFNAKHGRGKNPQCLVLAPTRELARQV 206
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Frame = +1
Query: 262 RNSTRTRDVQIVENV--TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLE 435
RN + Q E +F + L + L G +KP+ IQ +P G D++
Sbjct: 30 RNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVAR 89
Query: 436 AKSGTGKTVVFSIIALEKLNLNNGL-------QVMILTPTREIAAQI 555
AK+G+GKT+ + + L+KL + + IL P+RE+ Q+
Sbjct: 90 AKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Frame = +1
Query: 307 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 486
+F + L + L L GF P+ +Q VP G D ++++ +G+GKT+ + + L
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 487 KL--------------NLNNGLQVMILTPTREIAAQIC-DVIKQIGSHHKGLNVEXVMGG 621
++ + +Q MI+ P+RE+ QI +V K +G H+ + V+ ++GG
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRM-VQQLVGG 229
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 40.3 bits (90), Expect = 0.001
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Frame = +1
Query: 253 HDIRNSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLL 432
+D+ + E + + + L + L G PIQ + G D++
Sbjct: 85 YDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIA 144
Query: 433 EAKSGTGKTVVFSIIALEKLNLNNG-----------LQVMILTPTREIAAQICDVIKQIG 579
AK+GTGKT+ F I +++L G + ++L PTRE+A Q+ IK+
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESA 204
Query: 580 SHHKGLNVEXVMGGLS 627
+ L+ V GG+S
Sbjct: 205 PY---LSTVCVYGGVS 217
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.1 bits (87), Expect = 0.003
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Frame = +1
Query: 262 RNSTR-TRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEA 438
RN T+ TR+ TF + SE + L F +P+ IQ G ++
Sbjct: 359 RNKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIAD 418
Query: 439 KSGTGKTVVFSIIALEKLNLNN---------GL-QVMILTPTREIAAQICDVIKQIGSHH 588
+SG+GKT+ + + +++L G +V++L PT E+A+Q+ + I
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 589 KGLNVEXVMGG 621
V GG
Sbjct: 479 VPFRSMVVTGG 489
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 35.9 bits (79), Expect = 0.023
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Frame = +1
Query: 349 LISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE-----------KLN 495
L ++G + PIQ + G DL+ A++G GKT+ F + LE K+
Sbjct: 111 LKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMG 170
Query: 496 LNNGLQVMILTPTREIAAQI 555
V++L PTRE+A Q+
Sbjct: 171 YGRSPSVLVLLPTRELAKQV 190
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +1
Query: 304 VTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKT 459
V++ S+ LS+ L SGF +PS Q +P G D+++ A++G+GKT
Sbjct: 80 VSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 34.3 bits (75), Expect = 0.071
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Frame = +1
Query: 388 LHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNNGLQ---------VMILTPTRE 540
+ +P G LL A +G+GKT F + + + + M+L PTRE
Sbjct: 1 MQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 60
Query: 541 IAAQICDVIKQIGSHHKGL--NVEXVMGG 621
+ Q+ D K +G KGL V+GG
Sbjct: 61 LCVQVEDQAKMLG---KGLPFKTALVVGG 86
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +1
Query: 427 LLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVE 606
LL+ + GK +K + L+ +I+TPTRE+A Q+ + ++ + + + V
Sbjct: 253 LLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLEN-AAKNLSVKVV 311
Query: 607 XVMGGL 624
++GG+
Sbjct: 312 PIVGGM 317
>At1g01430.1 68414.m00058 expressed protein similar to hypothetical
protein GB:CAB80917 GI:7267605 from [Arabidopsis
thaliana]
Length = 456
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 476 IIENTTVFPVPDFASSNKSKPHLPSG 399
+I N+TV PVP SS +S P PSG
Sbjct: 45 LITNSTVSPVPTVRSSPESLPPDPSG 70
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/98 (21%), Positives = 40/98 (40%)
Frame = +1
Query: 325 LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN 504
LSE T L G Q + G ++ + + +GK++ +++ E+L +
Sbjct: 378 LSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVFEELCKDT 437
Query: 505 GLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEXVMG 618
+ L PT+ +A D ++ + KG MG
Sbjct: 438 NSCALYLFPTKALAQ---DQLRALSDLIKGFEASINMG 472
>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1000
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 120 MKWLDVVKASCKDTRLKIVECSSFG 46
++W++++KA+ LK +E S FG
Sbjct: 29 LRWIEIIKAALDQNHLKQLEGSQFG 53
>At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 997
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 120 MKWLDVVKASCKDTRLKIVECSSFG 46
++W++++KA+ LK +E S FG
Sbjct: 29 LRWIEIIKAALDQNHLKQLEGSQFG 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,516
Number of Sequences: 28952
Number of extensions: 248127
Number of successful extensions: 684
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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