Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P05
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.7  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   8.7  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 226 SIRTTGLXIALKGHLYIYPLRTYLLNKVEYLFTPVLLNA*FKAL 357
           S+  +GL +  + +  ++PLR  LLN  E   + +L N   +A+
Sbjct: 511 SLAVSGLSVVGRDYYGVFPLRGKLLNVREASHSQILNNKEIQAI 554


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 157 NVQYTFVTLLFPMIITLTYNEKARKTYE 74
           NV Y F    + M + L YN +   TYE
Sbjct: 594 NVTYVFQVSTYQMGVLLLYNHRDSYTYE 621


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 132 SVTNVYCTFFTMSVIEFLKDLPSYDANNFTLFNTDHGI-XNCSKRPSIYLPTK 287
           S+ N   +   +SVI+ L+DL S+  N    F+ D     N  + PS  LP +
Sbjct: 339 SILNSKNSISGLSVIDVLRDLGSHLINAVNSFDADDQTWYNMCESPSEKLPRR 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,531
Number of Sequences: 5004
Number of extensions: 48315
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)