Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P05
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_43071| Best HMM Match : 7tm_1 (HMM E-Value=0.015)                   28   5.1  
SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)                 28   6.8  
SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 27   9.0  

>SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 396 VYINSCKCQNEFLHGKLIYQPNNC 467
           V +N C C N+  HG  + Q N C
Sbjct: 214 VQVNECYCVNQVTHGAPLVQVNEC 237


>SB_43071| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
          Length = 261

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = -1

Query: 310 QLCSEGMSLVGKYIDGLLEQFXIPWSVLNNVKLFAS*DGRSFKNSITDIVKNVQYTFVTL 131
           QLCS G  L    +  L     +    L  V LF +   R  +  IT + K+  YT +  
Sbjct: 125 QLCSSGFRLPLDIVGALFITSCLTTLCLATVDLFIAIT-RPLRY-ITLVTKSKAYTAIMP 182

Query: 130 LFPMIITLTY 101
            FP ++TL Y
Sbjct: 183 YFPAVVTLWY 192


>SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)
          Length = 595

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -1

Query: 277 KYIDGL--LEQFXIPWSVLNNVKLFAS*DGRSFKNSITDIVKNVQYTFVTLLFP 122
           +Y+ GL  +E   +  S++ +V  +AS    +F N ++D ++NVQ   + + FP
Sbjct: 469 QYLGGLNAIELITVYRSLIRSVIEYASAAFANFPNYLSDALENVQRRALKIAFP 522


>SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 362

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 68  LTFISLTCFFIIG*RYYHWEQKCNEC 145
           +T +SLTCF  IG  Y+ +E  C +C
Sbjct: 218 VTILSLTCFIPIG-CYFIYEASCIKC 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,822,589
Number of Sequences: 59808
Number of extensions: 345053
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)