Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P05
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL110487-4|CAB54427.1|  505|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    27   7.9  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      27   7.9  

>U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical
           protein C04G6.4 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 277 KYIDGLLEQFXIPWSVLNNVKLFAS*DGR---SFKNSITDIVKNVQYTFVTLLFP 122
           KY D + +   IP +++  ++  A  +G     F  S+T  +KNV  T VT   P
Sbjct: 333 KYFDAISQLLEIPSTLVEVIQRAAKSEGLPDDEFSTSVTQAIKNVYKTSVTTWEP 387


>AL110487-4|CAB54427.1|  505|Caenorhabditis elegans Hypothetical
           protein Y39E4B.5 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 38  LILIFDSPCFLTFISLTCFFIIG*RYYHWEQKCNECILHIFHYVGDRILEGS 193
           L  IF S CF+    +  FF +   Y    +   +  L I H + DR L GS
Sbjct: 424 LFRIFGSMCFVFLFVVPSFFCLCYIYLFMPETLGKSTLDIIHEMIDRGLHGS 475


>AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical
           protein C10F3.4b protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 509 PFSCYI*XAISNNLTIIRLINKFPMQKFVLALATINVNRSVHSV 378
           PF   +   +  N+   R I+K PM+K V+  A     RSV S+
Sbjct: 3   PFPRILDDRLPRNMRRPRPIDKMPMRKIVMLGANARTQRSVSSI 46


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 72   VRKQGESKIKISLAWYNHNQCFY 4
            VR  G+SK     A+YN N+ FY
Sbjct: 2648 VRNHGDSKQAFFTAFYNQNEAFY 2670


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 72   VRKQGESKIKISLAWYNHNQCFY 4
            VR  G+SK     A+YN N+ FY
Sbjct: 2648 VRNHGDSKQAFFTAFYNQNEAFY 2670


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 72   VRKQGESKIKISLAWYNHNQCFY 4
            VR  G+SK     A+YN N+ FY
Sbjct: 2648 VRNHGDSKQAFFTAFYNQNEAFY 2670


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,326
Number of Sequences: 27780
Number of extensions: 269230
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)