Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P05
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 11  H*LWLYHARLILIFDSPCFLTFISLTCFFIIG*RYYHWEQKCNECILHIFHYVGDRI 181
           H LWLYH + +L       LT + L+C       Y H  Q C+  I  + H   D +
Sbjct: 110 HYLWLYHDKTLLYMSK---LTLV-LSCAMKFE-SYPHDTQICSMMIESLSHTTQDLV 161


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 609 NRQVHHTLTSTS 574
           NR+VHHT +S+S
Sbjct: 408 NRKVHHTTSSSS 419


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 254 AIXNPVVRIEQCKVVRVVRRKILQEF 177
           A   P++ I  C V  V+ RKI + F
Sbjct: 819 AFAYPIMLIVVCTVYAVLTRKIPEAF 844


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,838
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)