Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P05
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65540.1 68418.m08247 expressed protein                             29   1.8  
At5g06930.1 68418.m00783 expressed protein                             29   3.2  
At4g16730.1 68417.m02527 terpene synthase/cyclase family protein...    28   5.6  
At3g20520.1 68416.m02598 glycerophosphoryl diester phosphodieste...    27   9.7  

>At5g65540.1 68418.m08247 expressed protein 
          Length = 605

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 313 TQLCSEGMSLVGKYIDGLLEQFXIPWSVLNNVKLFAS*DGRSFKNSITDIVKN 155
           +QL S  MS +G+ +  L + +    S +  +K+F +  G S   S+ +IVK+
Sbjct: 366 SQLVSRHMSKLGRILKLLTDSYKKECSAMQLIKMFLNTTGYSNLGSLAEIVKD 418


>At5g06930.1 68418.m00783 expressed protein
          Length = 657

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
 Frame = +1

Query: 238 TGLXIALKGHLYIYPLRTYLLNKVEYLFTPVLLNA*FKALNXHIYIKTEWTDLFTLIVAS 417
           +GL + LK         TY L+    L   + L+     LN    +K +W D+ TLI A 
Sbjct: 263 SGLSLLLKSCGSDVSRLTYWLSNTVMLREIISLDFGSSKLNGLNSLKEDWGDVRTLIAAL 322

Query: 418 AKTNFCMGNLFINLIIVKLLLIAXYI*HENGKLSVXCFVLGIFS-PSSCKRVK 573
            +   C     +  I  +++++        G  S    ++G FS P++C R++
Sbjct: 323 RRVESCFFTQAVESIWSQVMMVHMI---PQGVDSTMGEMIGNFSEPATCDRLQ 372


>At4g16730.1 68417.m02527 terpene synthase/cyclase family protein
           similar to myrcene/ocimene synthase [GI:9957293];
           contains Pfam profile: PF01397 terpene synthase family
          Length = 547

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 292 YLLNKVEYLFTPVLLNA*FKALNXHIYIKTEWTDLFTLIVASAK 423
           +L N++  +   VL +   K LN   Y+K  WTDLF   +  +K
Sbjct: 337 FLYNEINQIGYDVLRD---KGLNVIPYLKQVWTDLFKTFLTESK 377


>At3g20520.1 68416.m02598 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to glycerophosphodiester phosphodiesterase
           (GI:1399038) [Borrelia hermsii]
          Length = 729

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 125 EQKCNECILHIFHYVGDRILEGSSVLRREQL 217
           E+  NEC+ H F +  D  LE  S +R  Q+
Sbjct: 600 ERFSNECVTHAFDFYDDPTLEIDSFVRDVQI 630


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,543
Number of Sequences: 28952
Number of extensions: 230963
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)