Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_P02
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    26   0.31 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.7  

>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 158 QNSKFEIMRRRQAFQTIIKIQ 220
           ++SK+ I R+R  FQT +K+Q
Sbjct: 58  KSSKYPIKRKRVRFQTRVKVQ 78


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -2

Query: 531 FAIFNGFI*NVLRI*LYF---GFFFWCR 457
           F +F GF  NV  I +YF    F  W R
Sbjct: 568 FLLFGGFFLNVSSIPIYFKWLSFLSWFR 595


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -2

Query: 531 FAIFNGFI*NVLRI*LYF---GFFFWCR 457
           F +F GF  NV  I +YF    F  W R
Sbjct: 568 FLLFGGFFLNVSSIPIYFKWLSFLSWFR 595


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 167 WSFDSVLVDELKLEFFNRR*KKISTLDI 84
           W+ +   +D+      NR  K++STL I
Sbjct: 638 WTLNGHFIDQTNGIVINRASKRVSTLSI 665


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 261 GFEEPSNCTCEATY 302
           GF+  + CTC+A Y
Sbjct: 770 GFDSCTVCTCDAKY 783


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 472 FLLV*KPNGIVQFVS 428
           FLL+  PNG + FVS
Sbjct: 115 FLLILTPNGKIVFVS 129


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 151 TLSKLQIRNYAKATSFPDYYQNPIF 225
           TLS L    ++ +T   DYY +P++
Sbjct: 398 TLSPLPSSVHSHSTIGNDYYNSPLY 422


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +2

Query: 323 FTLILSLIKSSTM*WKKVTNDWL 391
           +T++L  ++     WK V  +W+
Sbjct: 74  YTVLLEFVQIDPHRWKYVNGEWV 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,029
Number of Sequences: 336
Number of extensions: 3246
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)