Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_P02
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6907| Best HMM Match : PAN (HMM E-Value=0.019) 33 0.26
SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17) 33 0.26
SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06) 32 0.35
SB_22681| Best HMM Match : PAN (HMM E-Value=0.0027) 30 1.4
SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7) 30 1.4
SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078) 29 4.3
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2) 28 5.7
SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06) 28 7.5
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_38761| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_6907| Best HMM Match : PAN (HMM E-Value=0.019)
Length = 324
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 237 SSETHCRFGFEEPSNCTCEATY 302
SS CR G+E+P CTC+ Y
Sbjct: 130 SSHRACRIGYEDPFRCTCQRNY 151
>SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)
Length = 634
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 237 SSETHCRFGFEEPSNCTCEATY 302
SS CR G+E+P CTC+ Y
Sbjct: 433 SSHRACRIGYEDPFRCTCQMNY 454
>SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)
Length = 659
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 250 IADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEK 372
++D K+RA P KP + SSV D L+ ++ +HV+ K
Sbjct: 220 LSDKMNKDRAQTPPKPSPPLDLSSVDLDELIQRIRHHVLVK 260
>SB_22681| Best HMM Match : PAN (HMM E-Value=0.0027)
Length = 329
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 252 CRFGFEEPSNCTCEATY 302
CR G+EEP CTC Y
Sbjct: 143 CRIGYEEPYRCTCGKNY 159
>SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7)
Length = 626
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 614 NNDLFSVIGPGTWYVIPPLLMGCNCNNGLQ 525
N F + PG WY PP L C+ NG Q
Sbjct: 85 NRSSFKTLSPGEWYTEPP-LGSCHRGNGKQ 113
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 614 NNDLFSVIGPGTWYVIPPLLMGCNCNNGLQ 525
N F + PG WY PP C+ NG+Q
Sbjct: 326 NKSSFRTLSPGEWYTEPP-SGPCHRGNGIQ 354
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 614 NNDLFSVIGPGTWYVIPPLLMGCNCNNGLQ 525
N F + PG WY PP C+ NG+Q
Sbjct: 490 NRSSFRTLSPGEWYTEPP-SGPCHRGNGIQ 518
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 614 NNDLFSVIGPGTWYVIPPLLMGCNCNNGLQ 525
N F + PG WY PP C+ NG+Q
Sbjct: 367 NRTSFRTLSPGEWYTEPP-SGPCHRGNGIQ 395
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 602 FSVIGPGTWYVIPPLLMGCNCNNGLQ 525
F + PG WY PP C+ NG+Q
Sbjct: 289 FRTLSPGEWYTEPP-SRPCHRGNGIQ 313
>SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 699
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +1
Query: 325 YFDPLVNKVINHVMEKGNKRLARQLVEKAFENIKRKQIE 441
YFDPL KV++ M N LARQ ++A E IKR Q E
Sbjct: 503 YFDPLKTKVVHFSMNPSN--LARQ--QRA-EEIKRLQDE 536
>SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)
Length = 788
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 383 DWLVNSLRKHSKISKGNKLNDTIWLLHQKKKPKXS*ILRTFYIKPLKIANHCYNYSPSRG 562
D +N+L++H K ++ +D +WL +K K ILR +K +++ S
Sbjct: 533 DMYMNNLKEHHPHHK-DRFSDQVWLFQGRKADKNLRILRERILKLTRLSKEIIYGSEPLQ 591
Query: 563 VVSHTR 580
VV + +
Sbjct: 592 VVGYKK 597
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 400 VEKAFENIKRKQIERYHLASTPEEKAKI 483
+++AFE ++ + + + +A T EEKAKI
Sbjct: 22 LQEAFEKFRKSRQKEFKIAKTMEEKAKI 49
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +1
Query: 340 VNKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIXLNPKDILYKAV 519
+N+++NH E +K++ KA + +K + TPEE++K + P +
Sbjct: 565 INRIMNH-REGYDKKI------KAKKGKNKKSKKTLPTGDTPEEESKPDIEPAQPIPTPQ 617
Query: 520 ENCKPLLQLQP 552
NCK + QP
Sbjct: 618 VNCKERYEKQP 628
>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
Length = 1716
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +1
Query: 253 ADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKAFENIKRK 432
A SDL+ RAT ++ + S++ +P N V H L++ +
Sbjct: 178 ATSDLQKRATELLEKSETTLDSTISTEPFPNLVKPH------------LIQAPLKQTSVS 225
Query: 433 QIERYHLASTPEEKAKIXLNPK-DILYK 513
Q E + A P K K +NP+ DILY+
Sbjct: 226 QPETHIAAPNPSYKQKRDINPENDILYQ 253
>SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06)
Length = 798
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 232 EDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKG 375
ED VK++A + + P ++S+ P++N+++N + G
Sbjct: 537 EDDVKILAHKPISKSCNLDPLPTSLSKGCFSTLLPIINRIVNASLSSG 584
>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1151
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 304 VSETSSVYFDPLVNKVINH-VMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAK 480
+SE S +Y P++ + H +KG+ + LVEK+ ++ Y + P+EK +
Sbjct: 42 LSEESDIY--PILKQQEEHGFFDKGDFKFLECLVEKSNNAEADAEMADYRTKAPPKEKLQ 99
Query: 481 IXLNPKDI 504
I K++
Sbjct: 100 IFGREKEV 107
>SB_38761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 112 RRLKNSSFNSSTRTLSKLQIRNYAKATS 195
+++ + ++N +T+TL +QI NY+ +TS
Sbjct: 77 QKITSFAYNGNTKTLRTVQIGNYSYSTS 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,072,238
Number of Sequences: 59808
Number of extensions: 354141
Number of successful extensions: 1041
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -